[gmx-developers] Segfault/Core dump on Solaris -> reproduced on linux ! Debug output

David spoel at xray.bmc.uu.se
Mon Dec 9 19:18:17 CET 2002


On Mon, 2002-12-09 at 20:04, Erik Lindahl wrote:
> Marc Baaden wrote:
> 
> >Hi,
> >
> >just reproduced my problem on a linux box, requesting 8 instead of
> >2 nodes. It gets weirder and weirder.
> >
> >I now know that the bonds() routine is responsible for the problem
> >as shows eg the adb output from below. This same routine segfaults
> >for 1 (and presumably 2, 12 and 16) processors under Solaris and
> >for 8 processors on linux. Strangely the 2 processors on linux job
> >is running fine.
> >
> >Any clues to this puzzle ??
> >
> >Here is the copy of adb output
> >  
> >
> 
> Hm... no idea, but if you send me the input files I can try to have a 
> look at it over the next week or so :-)
> 
This is already fixed in CVS, and I've suggested a workaround for Marc.

> Cheers,
> 
> Erik
> 
> 
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-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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