[gmx-developers] Change restraints in run-time?
K.A. Feenstra
Feenstra at chem.vu.nl
Tue Nov 19 14:28:00 CET 2002
David van der Spoel wrote:
> On Tue, 2002-11-19 at 11:56, Gerwin de Haan wrote:
>
>>Hi all,
>>
>>Every n md steps i like to make changes to (distance,angular) restraints, that
[...]
>
> You want to include all possible restraints in the toplogy and then
> dynamically turn them off and on. Not entirely trivial, but easier then
> modifying the topology structure.
Do note that your forces will no longer be conservative, i.e. you might
generate (or lose?) energy.
--
Groetjes,
Anton
________ ___________________________________________________________
| | Anton Feenstra |
| . | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
| |---- | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands |
| |---- | Tel: +31 20 44 47608 - Fax: +31 20 44 47610 |
| ' __ | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
| / \ |-----------------------------------------------------------|
| ( ) | Dept. of Biophysical Chemistry - University of Groningen |
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| __ | Tel +31 50 363 4327 - Fax +31 50 363 4800 |
| / \ | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton |
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