[gmx-developers] adding angle dependent non-bonded interactions?
Julius Su
jsu at caltech.edu
Wed May 5 02:33:53 CEST 2004
Hello,
Is it possible/easy to add an angle dependent non-bonded interaction to
GROMACS of the form --
E = (1 + (cos theta)^2) exp(-a r)
where theta is the angle between two vectors:
(1) radial vector.
(2) normal vector defined by atom and 2 bonded neighbors.
This would be used to implement a proton dynamics force field. I
already have the formulas for analytical gradients with respect to all
atoms involved.
Thanks,
Julius
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