[gmx-developers] Compilation of CVS version - LAPACK problem

[Erik Lindahl]

Hi,

Try a 'cvs update -A', since we recently added a bunch of stuff (i.e.  
new directories). If that still doesn't work I'll look more into it.  
This code is a semi-automatic translation by f2c, but it's fairly easy  
for me to edit the labels if they make the compiler choke.

Cheers,

Erik



On Feb 7, 2005, at 5:44 PM, Oliver Lange wrote:

> Hi Paul,
>
> i updated once again,
> did a make distclean
> and compiled again.
>
> Same error.
>
> It seems that i have a problem with my Linux setup.
>
> Any hint, what i can do about it ?
>
> Anyway, i excluded most of the tools from compilation and that works,  
> for now.
>
> But one should keep in mind that there can be problems with the  
> installation of the LAPACK libraries, would be good to tackle that  
> before the distribution comes out.
>
> Regards
> Oliver
>
>
>
> System: Linux Suse 9.0, gcc 3.3.1,
>
> bin/sh ../../libtool --mode=link cc  -g -O3 -fomit-frame-pointer  
> -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops  
>  -L/home/olange/packages/fftw-linux/lib  -o g_cluster  g_cluster.o  
> libgmxana.la ../mdlib/libmd.la ../gmxlib/libgmx.la -L/usr/X11R6/lib  
> -lnsl -lrfftw -lfftw -lm   -lSM -lICE -lX11
> cc -g -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused  
> -malign-double -funroll-all-loops -o g_cluster g_cluster.o   
> -L/home/olange/packages/fftw-linux/lib ./.libs/libgmxana.a  
> -L/usr/X11R6/lib ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl  
> /home/olange/packages/fftw-linux//lib/librfftw.a  
> /home/olange/packages/fftw-linux//lib/libfftw.a -lm -lSM -lICE -lX11
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1b3):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:201: undefined reference to `.L10'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1bc):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:201: undefined reference to `.L23'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1c5):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:26: undefined reference to `.L37'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1ce):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:71: undefined reference to `.L53'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1d7):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:73: undefined reference to `.L54'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1e0):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:73: undefined reference to `.L56'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1e9):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:74: undefined reference to `.L62'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1f2):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:76: undefined reference to `.L63'
> ../gmxlib/.libs/libgmx.a(ilasrt2.o)(.debug_info+0x1fb):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> ilasrt2.c:79: undefined reference to `.L65'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1b2):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:58: undefined reference to `.L10'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1bb):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:29: undefined reference to `.L58'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1c4):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:29: undefined reference to `.L59'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1cd):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:30: undefined reference to `.L62'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1d6):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:34: undefined reference to `.L69'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1df):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:37: undefined reference to `.L70'
> ../gmxlib/.libs/libgmx.a(slasrt2.o)(.debug_info+0x1e8):/mnt/wombat1/ 
> olange/gromacs_src/test_patching/gromacs-3.2.1/src/gmxlib/gmx_lapack/ 
> slasrt2.c:204: undefined reference to `.L73'
> collect2: ld returned 1 exit status
> make[3]: *** [g_cluster] Error 1
>
>
>
>
>
>
> Paul van Maaren wrote:
>> +++ Oliver Lange [Mon, Feb 07, 2005 at 11:23:59AM +0100]:
>>> i cannot compile the CVS version.
>> Did you do a cvs update before the compilation? I did this this  
>> morning and
>> it compiles fine for me.
>
> -- 
> Oliver Lange
> MPI for biophysical Chemistry
> olange at gwdg.de
> Fax: +495512012302
> Tel: +495512012305
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