[gmx-developers] makefile error

[Florian Haberl]

Hi,


> The Makefile are generated automatically, so we never ever read or edit
> them.
>
> Could you show us the exact error message you get? And did you get any
> error messages when running ./bootstrap?

make error msg is after the sig.

bootstrap output is in attachment "bootstrap"

Loaded modules 

Currently Loaded Modulefiles:
 1) intel64-c/8.1-024   2) intel64-f/8.1-024   3) mpich/intel64-8.1

Login shell is csh.



Greetings,

Florian


-- 
-------------------------------------------------------------------------------
 Florian Haberl                            Universitaet Erlangen/
 Computer-Chemie-Centrum    Nuernberg
                                                      Naegelsbachstr. 25
                                                      D-91052 Erlangen
  Mailto: florian.haberl AT chemie.uni-erlangen.de
 -------------------------------------------------------------------------------


[quote]

ewald_util.c(267): warning #1572: floating-point equality and inequality 
comparisons are unreliable
          if (qqA != 0.0 || qqB != 0.0) {
                  ^

ewald_util.c(267): warning #1572: floating-point equality and inequality 
comparisons are unreliable
          if (qqA != 0.0 || qqB != 0.0) {
                                ^

ewald_util.c(301): warning #1572: floating-point equality and inequality 
comparisons are unreliable
        if (dipole_coeff != 0) {
                         ^

ewald_util.c(326): warning #1572: floating-point equality and inequality 
comparisons are unreliable
        if (dipole_coeff != 0) {
                         ^

futil.c(516): error: expected an expression
        strcpy(libpath,GMXLIBDIR);
                       ^

compilation aborted for futil.c (code 2)
could not execute /opt/mpich-1.2.6-intel81-64/bin/mpicc  -DHAVE_CONFIG_H -I. 
-I. -I../../src -I../../include -DGMXLIBDIR="/home/cluster64/bco/bco117/bin/
gmx-cvs/share/top" -I/home/cluster64/bco/bco117/bin/fftw-64-intel-8.1/include 
-I/usr/local/include -O3 -c futil.c -MT futil.lo -MD -MP -MF .deps/futil.TPlo 
-o futil.o at /opt/mpi/bin/mpicc line 54.
make[4]: *** [futil.lo] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
[/quote]

-------------- next part --------------
./bootstrap
configure.ac:14: warning: do not use m4_patsubst: use patsubst or m4_bpatsubst
configure.ac:825: warning: do not use m4_regexp: use regexp or m4_bregexp
autoheader2.50: `src/config.h.in' is created
src/gmxlib/Makefile.am:32: libgmx at LIBSUFFIX@_la_DEPENDENCIES was already defined in condition TRUE, which implies condition GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_TRUE

  libgmx at LIBSUFFIX@_la_DEPENDENCIES (User, where = 32) =
  {
    TRUE => @GMXLIB_LIBOBJS@                  \
                                    nonbonded/libnonbonded.la         \
                                    $(BLAS_LIBOBJS) $(LAPACK_LIBOBJS)

  }
src/gmxlib/Makefile.am:32: libgmx at LIBSUFFIX@_la_DEPENDENCIES was already defined in condition TRUE, which implies condition GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_FALSE

  libgmx at LIBSUFFIX@_la_DEPENDENCIES (User, where = 32) =
  {
    TRUE => @GMXLIB_LIBOBJS@                  \
                                    nonbonded/libnonbonded.la         \
                                    $(BLAS_LIBOBJS) $(LAPACK_LIBOBJS)

    GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_TRUE => nonbonded/libnonbonded.la gmx_blas/libblas.la
  }
src/gmxlib/Makefile.am:32: libgmx at LIBSUFFIX@_la_DEPENDENCIES was already defined in condition TRUE, which implies condition GMX_SYSTEM_BLAS_TRUE GMX_SYSTEM_LAPACK_TRUE

  libgmx at LIBSUFFIX@_la_DEPENDENCIES (User, where = 32) =
  {
    GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_TRUE => nonbonded/libnonbonded.la gmx_blas/libblas.la
    TRUE => @GMXLIB_LIBOBJS@                  \
                                    nonbonded/libnonbonded.la         \
                                    $(BLAS_LIBOBJS) $(LAPACK_LIBOBJS)

    GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_FALSE => nonbonded/libnonbonded.la gmx_blas/libblas.la gmx_lapack/liblapack.la
  }
src/gmxlib/Makefile.am:32: libgmx at LIBSUFFIX@_la_DEPENDENCIES was already defined in condition TRUE, which implies condition GMX_SYSTEM_BLAS_TRUE GMX_SYSTEM_LAPACK_FALSE

  libgmx at LIBSUFFIX@_la_DEPENDENCIES (User, where = 32) =
  {
    GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_TRUE => nonbonded/libnonbonded.la gmx_blas/libblas.la
    GMX_SYSTEM_BLAS_FALSE GMX_SYSTEM_LAPACK_FALSE => nonbonded/libnonbonded.la gmx_blas/libblas.la gmx_lapack/liblapack.la
    TRUE => @GMXLIB_LIBOBJS@                  \
                                    nonbonded/libnonbonded.la         \
                                    $(BLAS_LIBOBJS) $(LAPACK_LIBOBJS)

    GMX_SYSTEM_BLAS_TRUE GMX_SYSTEM_LAPACK_TRUE => nonbonded/libnonbonded.la
  }
src/gmxlib/nonbonded/nb_kernel/Makefile.am:51: invalid unused variable name: `C_KERNEL_SOURCES'
src/gmxlib/nonbonded/nb_kernel/Makefile.am:30: invalid unused variable name: `FORTRAN_KERNEL_SOURCES'
src/gmxlib/nonbonded/nb_kernel/Makefile.am:54: invalid unused variable name: `KERNEL_SOURCES'