[gmx-developers] gmx 3.3_rc1 - block_tx.c error

[Erik Lindahl]

Hi,

That looks like a much older version; the head branch is currently  
3.3_beta_20050831, and release-3-3-patches is version 3.3_rc1!

Cheers,

Erik

On Sep 8, 2005, at 6:59 AM, David Bostick wrote:

>
> Hi Erik,
>
> I checked out the current CVS version and tested again.  This time, I
> tested a parallel run on 2 processors, which finished successfully.
> However, when I tried on 4 processors, I get the same block_tx.c  
> error as
> before, except that now the version cited for mdrun is 3.2.9_beta.:
>
> Reading file test.tpr, VERSION 3.3_rc1 (single precision)
> -------------------------------------------------------
> Program mdrun_mpi, VERSION 3.2.90_beta_20040828
> Source code file: block_tx.c, line: 74
>
> Fatal error:
> 0: size=816, len=840, rx_count=0
>
> -------------------------------------------------------
>
> The tpr file is from a version 3.3 grompp. Is it posssible
> that something in the top branch CVS version is wrong?  Previously,  
> the
> mdrun version cited in the error was 3.3_rc1 as follows:
>
> Reading file test.tpr, VERSION 3.3_rc1 (single precision)
> -------------------------------------------------------
> Program mdrun_mpi, VERSION 3.3_rc1
> Source code file: block_tx.c, line: 74
>
> Fatal error:
> 0: size=0, len=4, rx_count=0
>
> -------------------------------------------------------
>
> David
>
>
> On Wed, 7 Sep 2005, Erik Lindahl wrote:
>
>
>> Hi Dave/Carsten,
>>
>> The fix should be in CVS (both release-3-3-patches and head  
>> branch) now.
>>
>> Cheers,
>>
>> Erik
>>
>> On Sep 7, 2005, at 6:54 AM, Carsten Kutzner wrote:
>>
>>
>>> Hello David,
>>>
>>> this bug has been fixed yesterday by Erik.
>>>
>>>   Carsten
>>>
>>>
>>> On Tue, 6 Sep 2005, David Bostick wrote:
>>>
>>>
>>>
>>>>
>>>> I also get the block_tx.c error on a 32 bit Xeon cluster.
>>>>
>>>> David
>>>>
>>>>
>>>> On Tue, 6 Sep 2005, David Bostick wrote:
>>>>
>>>>
>>>>
>>>>>
>>>>> Hello,
>>>>>
>>>>> I wasn't sure if I should go directly to the bugfix site or not,
>>>>> but I
>>>>> tried the new gmx3.3 on an x86-64 machine and an SGI Altix and
>>>>> got the
>>>>> following error message on both of them when performing a test
>>>>> run that
>>>>> works fine with previous versions:
>>>>>
>>>>> Program mdrun_mpi, VERSION 3.3_rc1
>>>>> Source code file: block_tx.c, line: 74
>>>>>
>>>>> Fatal error:
>>>>> 0: size=0, len=4, rx_count=0
>>>>>
>>>>> I don't know if I am doing something wrong or not, but I'm fairly
>>>>> sure
>>>>> it's not due to the system.
>>>>>
>>>>> David
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>> --
>>>> =======================================|
>>>> David Bostick                   |
>>>> The Scripps Research Institute         |
>>>> Dept. of Molecular Biology, TPC 6      |
>>>> 10550 N. Torrey Pines Rd.            |
>>>> La Jolla, CA 92037               |
>>>> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=|
>>>> Phone: 858-784-9614               |
>>>> Fax:   858-784-8688               |
>>>> Email: dbostick at scripps.edu           |
>>>> Web:   http://www.scripps.edu/~dbostick|
>>>> =======================================|
>>>>
>>>> _______________________________________________
>>>> gmx-developers mailing list
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>>>> http://www.gromacs.org/mailman/listinfo/gmx-developers
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>>>>
>>>>
>>>>
>>>
>>>
>>> ---------------------------------------------------
>>> Dr. Carsten Kutzner
>>> Max Planck Institute for Biophysical Chemistry
>>> Theoretical and Computational Biophysics Department
>>> Am Fassberg 11
>>> 37077 Goettingen, Germany
>>> Tel. +49-551-2012313, Fax: +49-551-2012302
>>> eMail ckutzne at gwdg.de
>>> http://www.gwdg.de/~ckutzne
>>>
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>>>
>>>
>>>
>>
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>>
>>
>
> -- 
> =======================================|
> David Bostick                   |
> The Scripps Research Institute         |
> Dept. of Molecular Biology, TPC 6      |
> 10550 N. Torrey Pines Rd.            |
> La Jolla, CA 92037               |
> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=|
> Phone: 858-784-9614               |
> Fax:   858-784-8688               |
> Email: dbostick at scripps.edu           |
> Web:   http://www.scripps.edu/~dbostick|
> =======================================|
>
> _______________________________________________
> gmx-developers mailing list
> gmx-developers at gromacs.org
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>
>