[gmx-developers] single bugfix listing

David van der Spoel spoel at xray.bmc.uu.se
Sun Mar 19 21:49:09 CET 2006


Erik Lindahl wrote:
> Hi David,
> 
> Originally that was one of our idea for the gmx-revision list, but  I'll 
> be the first to admit it's not working that way now :-)
> 
> We want to keep things as automated as possible, though. One such  thing 
> I've thought of is to introduce automated nightly builds of  
> distribution tarballs from the release branch. Perhaps the best  option 
> would be mix this with a (likewise automated) online list of  commits in 
> the release branch?  It won't be perfect, and perhaps a  bit brief, but 
> it will at least be available.
> 
> I guess we should also start referring to bugzilla entry numbers when  
> we commit fixes...
> 
> Berk, David, and I will be meeting in Uppsala this week, so we'll try  
> to come up with something!
> 
For one thing I'll hack up some php code to update the gmx-revision 
changes list automatically.

> Cheers,
> 
> Erik
> 
> On Mar 17, 2006, at 8:02 PM, David Mobley wrote:
> 
>> Dear all,
>>
>> I've had a number of people e-mail me over the last few days who  
>> turned up e-mails from the GROMACS list where I had noticed bugs  (for 
>> example, bugs in mdrun -rerun and in the dihedral restraints  code). 
>> The e-mails typically ask what exactly the bug was, if it  was 
>> resolved, and if I can send a patch.
>>
>> Would it be possible to have a single web page on the GROMACS site  
>> which lists all of the bugs that have been identified and fixed  since 
>> the release of the current version? Then there would be one  single 
>> page for people to monitor to see whether they are using a  "buggy" 
>> section of code. Probably, it would be most helpful if this  list 
>> either also had links to patches (for example, the dihedral  
>> restraints fix just requires a new dihres.c) or (in the case of  more 
>> detailed bugs) just points people to CVS.
>>
>> I am a bit nervous that there are a lot of people who download, for  
>> example, GROMACS 3.3, and just start using it without ever either  
>> looking at bugzilla or the users  list to find out whether there  are 
>> bugs in the options they're using. And this information is  nontrivial 
>> to get from either place: As far as I know, it requires  listing ALL 
>> (not just open) bugs on bugzilla and looking to see if  any of them 
>> are problematic. It also would require searching the  users list for 
>> each option that people are using, as I think there  are some bugs 
>> that never made it into bugzilla.
>>
>> Anyway, that's all to say I think it woudl be really useful if part  
>> of the bugfix process could be posting bugfixes somewhere on the  web 
>> page on a single page that people can monitor. Probably also it  would 
>> be a good idea to e-mail the users list when there are  bugfixes that 
>> are especially significant.
>>
>> Just some ideas...
>>
>> Thanks!
>> David Mobley
>> UCSF
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> 
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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