[gmx-developers] trajectory files corrupted

David van der Spoel spoel at xray.bmc.uu.se
Fri Jun 22 20:53:20 CEST 2007

mchen2 at mailer.fsu.edu wrote:
> Hi,
>  As the subject, it happened to me several times when the cluster 
> encountering delay writing on running REM MD. The job is finished 
> without any error, but the trajectories are corrupted. Is it possible to 
> enhance data output?
please send more details, but if gmxcheck tells you the trajectories are 
corrupt then you are probably out of luck.
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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