[gmx-developers] correct usage of do_fit
lindahl at cbr.su.se
Sun Mar 4 20:16:32 CET 2007
On Mar 4, 2007, at 7:53 PM, Martin Höfling wrote:
> ... and gromacs is well tested too :-) . My fault was the mass
> vector. I
> provided only the masses of the fit group althoug it needs the full
> array (
> probably only using the values in fit index ).
Correct - sorry if that wasn't documented. The reason for using the
full array (i.e. atomic indices) is that you sometimes fit one group
and then calculate RMSD for 10 different index groups. In that case
it seems stupid to have to create 10 different mass arrays, just
because the index groups are different.
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