[gmx-developers] problem with fftw while compiling the CVS-version

[reich at mpikg.mpg.de]

Thanks again Berk!

Best

Luther

> Hi,
>
> fftgrid appeared twice in the Makefile.
> Apparently you have one of the very few platforms that is sensitive to
> this.
> I have fixed it.
>
> Berk.
>
>
> reich at mpikg.mpg.de wrote:
>> Dear Gromacs-developers,
>>
>> I tried to compile the latest CVS-version but received the attached
>> error
>> message. To I have to download a special fftw-version or do I have to
>> consider anzthing special during the compilation? In case this version
>> is
>> not ready to compile could you point out one to me that is?
>>
>> Thanks
>>
>> Luther
>>
>>
>> make[2]: Entering directory
>> `/cluster/src/gromacs/3.3.3-cvs/mpich2/gcc/src/mdlib'
>> /bin/sh ../../libtool --tag=CC --mode=link mpicc  -O3
>> -fomit-frame-pointer
>> -finline-functions -Wall -Wno-unused -funroll-all-loops   -o
>> libmd_mpi.la
>> -rpath /cluster/gromacs/3.3.3-cvs/mpich2/gcc/lib -version-info 4:0:0
>> calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo
>> domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo
>> force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo
>> nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo fftgrid.lo partdec.lo
>> pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo
>> tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo
>> csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo
>> gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo     -lxml2
>> -L/usr/lib64
>> -lnsl -lfftw3f -lm   -lSM -lICE -lX11
>> mpicc -shared  .libs/calcmu.o .libs/calcvir.o .libs/constr.o
>> ..libs/coupling.o .libs/domdec.o .libs/domdec_con.o .libs/domdec_setup.o
>> ..libs/domdec_top.o .libs/ebin.o .libs/edsam.o .libs/ewald.o
>> ..libs/fftgrid.o .libs/force.o .libs/ghat.o .libs/init.o .libs/mdatom.o
>> ..libs/mdebin.o .libs/minimize.o .libs/mvxvf.o .libs/ns.o .libs/nsgrid.o
>> ..libs/perf_est.o .libs/pme.o .libs/pme_pp.o .libs/pppm.o
>> .libs/fftgrid.o
>> ..libs/partdec.o .libs/pull.o .libs/pullutil.o .libs/rf_util.o
>> ..libs/shakef.o .libs/sim_util.o .libs/shellfc.o .libs/stat.o
>> ..libs/tables.o .libs/tgroup.o .libs/update.o .libs/vcm.o .libs/vsite.o
>> ..libs/wall.o .libs/wnblist.o .libs/csettle.o .libs/clincs.o
>> .libs/qmmm.o
>> ..libs/gmx_fft.o .libs/gmx_parallel_3dfft.o .libs/gmx_wallcycle.o
>> ..libs/qm_gaussian.o .libs/gmx_fft_fftw3.o  -Wl,--rpath
>> -Wl,/cluster/fftw/3.1.2/gcc/lib -Wl,--rpath
>> -Wl,/cluster/fftw/3.1.2/gcc/lib -lxml2 -L/usr/lib64 -lnsl
>> /cluster/fftw/3.1.2/gcc/lib/libfftw3f.so -lm -lSM -lICE -lX11
>> -Wl,-soname
>> -Wl,libmd_mpi.so.4 -o .libs/libmd_mpi.so.4.0.0
>> ..libs/fftgrid.o: In function `clear_fftgrid':
>> fftgrid.c:(.text+0x0): multiple definition of `clear_fftgrid'
>> ..libs/fftgrid.o:fftgrid.c:(.text+0x0): first defined here
>> ..libs/fftgrid.o: In function `unpack_fftgrid':
>> fftgrid.c:(.text+0x100): multiple definition of `unpack_fftgrid'
>> ..libs/fftgrid.o:fftgrid.c:(.text+0x100): first defined here
>> ..libs/fftgrid.o: In function `clear_rgrid':
>> fftgrid.c:(.text+0x170): multiple definition of `clear_rgrid'
>> ..libs/fftgrid.o:fftgrid.c:(.text+0x170): first defined here
>> ..libs/fftgrid.o: In function `clear_cgrid':
>> fftgrid.c:(.text+0x2d0): multiple definition of `clear_cgrid'
>> ..libs/fftgrid.o:fftgrid.c:(.text+0x2d0): first defined here
>> ..libs/fftgrid.o: In function `print_cgrid':
>> fftgrid.c:(.text+0x400): multiple definition of `print_cgrid'
>> ..libs/fftgrid.o:fftgrid.c:(.text+0x400): first defined here