[gmx-developers] Live Visualization of Simulations

Christian Seifert cseifert at bph.ruhr-uni-bochum.de
Mon May 26 13:49:58 CEST 2008

Hi Martin,

> Yes this is probably the easiest solution for simulations run locally (or
> where the filesystem is accessible locally). Also, it has the advantage
> that no extra communication has to be plugged in into GROMACS, which can
> delay simulation. Unfortunately this is not always the case here if you run
> it on larger clusters, you don't have acces to the FS (only via SSH).

I have the same problem (I just have a SSH connection). I use sshmount to 
mount the extrenal clusters into my local system (where I use VMD). This has 
the advantage, that I can easily copy files between the clusters, too.


M. Sc. Christian Seifert
Department of Biophysics
University of Bochum
ND 04/67
44780 Bochum
Tel: +49 (0)234 32 28363
Fax: +49 (0)234 32 14626
E-Mail: cseifert at bph.rub.de
Web: http://www.bph.rub.de

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