[gmx-developers] head mdrun broken?

[Carsten Kutzner]

Hi Berk,

thanks for fixing it. I can now run a single process again.
However, in parallel there still seems to
be a problem:

Program mdrun, VERSION 4.0.99_development_20090927
Source code file: domdec.c, line: 4159

Software inconsistency error:
Unknown state entry encountered in dd_redistribute_cg

Carsten


hess at sbc.su.se wrote:
> Hi,
> 
> There were many issues, but I think I have fixed them all,
> both for tpx and cpt.
> 
> Berk
> 
>> Hi,
>>
>> This is exactly the problem I mailed Michael Shirts about a few days ago.
>> I think he placed back the xi i/o line, but with double iso real.
>> You can fix it, or wait till Michael fixes it.
>>
>> Berk
>>
>>> Hi,
>>>
>>> there seems to be a problem with the current head version;
>>> I get a segmentation fault when I read in a tpr file. It happens
>>> at tpxio.c line 1978, ndo_double(state->nosehoover_xi ...
>>> Maybe this is already dealt with.
>>>
>>> Carsten
>>>
>>>
>>>
>>> --
>>> gmx-developers mailing list
>>> gmx-developers at gromacs.org
>>> http://lists.gromacs.org/mailman/listinfo/gmx-developers
>>> Please don't post (un)subscribe requests to the list. Use the
>>> www interface or send it to gmx-developers-request at gromacs.org.
>>>
>> --
>> gmx-developers mailing list
>> gmx-developers at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-developers
>> Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-developers-request at gromacs.org.
>>
> 

-- 
Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics Department
Am Fassberg 11
37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
www.mpibpc.mpg.de/home/grubmueller/
www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne/