[gmx-developers] Implementation of H-bond analysis
Anton Feenstra
feenstra at few.vu.nl
Thu Feb 12 23:43:36 CET 2009
Erik Marklund wrote:
> Hi,
>
> I second that. What you intend to do sounds much easier to implement in
> g_hbond.
Yes, exactly my point. If you need 'more frequent H-bond analysis', just
write more frames to your trajectory and use g_hbond (100 steps is .2
ps). No use in burdening mdrun with this.
Unless, of course, Emanual really want to add some sort of interaction
to the H-bonds. Emanuel can you clarify this?
--
Groetjes,
Anton
_____________ _______________________________________________________
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | IBIVU/Bioinformatics - Free University Amsterdam |
|( | )| | | De Boelelaan 1083A - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Tel +31 20 59 87783 - Fax +31 20 59 87653 - Room P136 |
| | Feenstra at few.vu.nl - www.few.vu.nl/~feenstra/ |
| | "You Could Be a Shadow" (The Breeders) |
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