[gmx-developers] g_hbond h-bond-analysis

[Anton Feenstra]

Emanuel Peter wrote:
> Dear developers,
> 
> Could you tell me some more about the g_hbond tool with its -hbn
> index-file-option?
> 
> Does this function dump-hbmap write down all h-bonds of the selected
> group that have existed over the whole trajectory or does it take just
> the last written trn-frame?

The hbmap will hold a matrix of <number of hbonds> x <number of frames>, 
and stores the existance of each hbond (from your -hbn index file) for 
each frame in your trajectory.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | IBIVU/Bioinformatics - Free University  Amsterdam     |
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