[gmx-developers] g_hbond h-bond-analysis
feenstra at few.vu.nl
Wed Feb 25 17:05:25 CET 2009
Erik Marklund wrote:
> Anton Feenstra skrev:
>> Emanuel Peter wrote:
>>> Does the tool g_hbond with its option -hbn then show a list of all
>>> stored hbonds per frame or does it just show a list of hbonds that
>>> existed in the last frame?
>> A list of all hbonds per frame.
> No, that's not entirely true. There's no frame-specific information in
> that file. The list contains all hbonds that
> ever existed at any point in the analyzed part of the trajectory, not
> per frame. That's why its size matches the y-dimension of the hbm-file.
Yes, you're right. I was still thinking about the hbmap (-hbm, the
difference with -hbn is only a few pixels...). Sorry about the confusion.
| | |
| _ _ ___,| K. Anton Feenstra |
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