[gmx-developers] center of mass bug with pulling reference group

[Berk Hess]

Jochen Hub wrote:
>
>>>
>>> Thanks a lot Berk,
>>>
>>> Jochen
>>>
>>>     
>> In x-y it should not matter.
>> But what might matter is that distances of atoms in the bilayer to the
>> pbc atom are larger
>> than half the box length, if the pbc atom is in a head group instead of
>> in the middle of the bilayer.
>>   
> Aaahh, not again the bloody pbc_atom... :(( Arrrg, I had this problem
> already 2 years ago, but I forgot, hmpf.  We fixed the script and now
> things are all right. So all my apologies for waisting your time. :)
> And thanks a lot for your help!
>
> Best wishes,
>
> Jochen
This is a nasty issue that we should really try to automate.
The problem is that I am not sure if there is a unique, good solution
that would work in 99% of the cases.

Berk