[gmx-developers] debugging gromacs with DDD

David van der Spoel spoel at xray.bmc.uu.se
Fri Apr 30 07:55:27 CEST 2010

On 2010-04-30 07.44, Mark Abraham wrote:
> ----- Original Message -----
> From: Igor Leontyev<ileontyev at ucdavis.edu>
> Date: Friday, April 30, 2010 15:38
> Subject: [gmx-developers] debugging gromacs with DDD
> To: gmx-developers at gromacs.org
>> Hi,
>> I am trying to use DDD interface to debug mdrun program. DDD
>> invocation,however, generate an error:
>> "../sysdeps/i386/elf/start.S: no such file or directory"
>> How to fix it?
>> GMX and FFTW codes were compiled with "-enable-debug" flag on
>> configurestep. DDD is called by the command: "ddd
>> $gmx_path/mdrun_db". GDB debugging (no GUI) starts without errors.
>> Environment is Ubuntu 9.10, DDD3.3.12.
> That suggests you have a problem with DDD, rather than GROMACS. Do other codes run under DDD? Have you checked it's troubleshooting FAQ/whatever?
> Mark
And have you tried with good olg gdb?

David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se

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