[gmx-developers] appending problem
David van der Spoel
spoel at xray.bmc.uu.se
Sun Aug 15 22:11:10 CEST 2010
Sorry for all the spamming, I did find another strange problem appending
my REMD run:
output files present: mutant22.trr mutant22.xtc mutant22.edr
output files not present or named differently: mutant22.log
(on all 32 nodes), however, the files do exist:
[neolith1:mutant/REMD] % ls -l mutant22*
-rw-r--r-- 1 x_davva x_davva 635276 Aug 15 21:34 mutant22.cpt
-rw-r--r-- 1 x_davva x_davva 8650172 Aug 15 21:34 mutant22.edr
-rw-r--r-- 1 x_davva x_davva 1813391 Aug 7 14:47 mutant22.gro
-rw-r--r-- 1 x_davva x_davva 10078055 Aug 15 21:34 mutant22.log
-rw-r--r-- 1 x_davva x_davva 635276 Aug 15 21:34 mutant22_prev.cpt
-rw-r--r-- 1 x_davva x_davva 42264672 Aug 15 21:27 mutant22.trr
-rw-r--r-- 1 x_davva x_davva 1191639216 Aug 15 21:34 mutant22.xtc
The command line is:
mpprun `which mdrun` -nice 0 -s kkk -replex 2500 -multi 32 -deffnm
mutant -v -dlb auto -maxh 23 -cpi -append
This is now with the latest head code. Any clues?
--
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
spoel at xray.bmc.uu.se http://folding.bmc.uu.se
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