[gmx-developers] Git master broken

Mark Abraham mark.abraham at anu.edu.au
Wed Aug 25 16:45:19 CEST 2010

----- Original Message -----
From: David van der Spoel <spoel at xray.bmc.uu.se>
Date: Wednesday, August 25, 2010 23:58
Subject: [gmx-developers] Git master broken
To: Discussion list for GROMACS development <gmx-developers at gromacs.org>

> Hi,
> it seems that git master is broken. Try the following:
> mkdir koko
> cd koko/
> git clone git at git.gromacs.org:gromacs
> git checkout -t origin/release-4-5-patches
> git merge release-4-5-patches

That just worked fine for me.

I get your symptoms if I do "git checkout master" before the merge, whether or not I checkout release-4-5-patches.

Christoph Jungan's merge commit on master dated Monday (5e3473a12) is not a simple merge commit (see git log -p). I'm not sure how he managed to do what he did, but I guess he started a merge from some not-quite-right starting point, had conflicts, didn't realise he'd not commited the merge result, did his edit, then committed.

To fix, someone will have to manually resolve the conflicts.


> less include/resall.h
> <<<<<<< HEAD
> t_restp *search_rtp(const char *key,int nrtp,t_restp rtp[]);
> /* Search for an entry in the rtp database */
> =======
> char *search_rtp(const char *key,int nrtp,t_restp rtp[]);
> /* Search for an entry in the rtp database, returns the rtp 
> residue name.
>  * A mismatch of one character is allowed, if there is only 
> one nearly
>  * matching entry in the database, a warning will be generated.
>  */
> t_restp *get_restp(const char *rtpname,int nrtp,t_restp rtp[]);
> /* Return the entry in the rtp database with rtp name rtpname.
>  * Generates a fatal error when rtpname is not found.
>  */
> >>>>>>> release-4-5-patches
> And a few more conflicts.
> Any clue how to fix this?
> -- 
> David van der Spoel, Ph.D., Professor of Biology
> Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
> spoel at xray.bmc.uu.se    http://folding.bmc.uu.se
> -- 
> gmx-developers mailing list
> gmx-developers at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-developers
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-developers-request at gromacs.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-developers/attachments/20100826/fc9cdf4f/attachment.html>

More information about the gromacs.org_gmx-developers mailing list