[gmx-developers] difficluties in compiling gromacs

Jin Wu jiw2003 at med.cornell.edu
Tue Jan 12 21:31:30 CET 2010


I get the following error message when I install gromacsv4.0.7. the commands I run are as follows:
/home/jinwu/swinstall/gromacs/v4.0.7/fftw-3.2.2 /configure --enable-threads --enable-float --enable-sse
make
make install
/home/jinwu/swinstall/gromacs/v4.0.7/gromacs-4.0.7/configure --with-fft=fftw3 --without-x --enable-shared
make
/usr/bin/ld: /usr/local/lib/libfftw3f.a(plan-dft-2d.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [libmd.la] Error 1
make[3]: Leaving directory `/home/jinwu/swinstall/v4.0.7/gromacs-4.0.7/src/mdlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/jinwu/swinstall/v4.0.7/gromacs-4.0.7/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/jinwu/swinstall/v4.0.7/gromacs-4.0.7/src'
make: *** [all-recursive] Error 1



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