[gmx-developers] GB + Charmm parameters for RNA

David van der Spoel spoel at xray.bmc.uu.se
Tue Jul 13 15:05:39 CEST 2010

I think I have fixed the bugs I reported earlier. Now for the next question:

Does anyone have a set of parameters for nucleic acids that one can use 
with gromacs? The charmm27.ff/gb.itp does not seem too complicated but 
relevant literature does not list any tables of parameters (making it in 
fact not relevant).

Either Charmm (preferred) or other parameters are fine.

David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se

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