[gmx-developers] git gromacs and -dlb
Carsten Kutzner
ckutzne at gwdg.de
Mon Jun 28 10:02:30 CEST 2010
Hi,
there appears to be an issue with the -dlb flag when turned on
from the very beginning in mdrun. For at least two different
MD systems (incl. dppc with PME) I get errors like
Fatal error:
248 particles communicated to PME node 3 are more than 2/3 times the
cut-off out of the domain decomposition cell of their charge group in
dimension y.
when started with
mpirun -np 4 mdrun -s ../tpr/ap_1ps.tpr -dlb yes.
With -dlb no everything works fine.
Carsten
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