[gmx-developers] release-4-6 branch doesn't compile?
Justin Lemkul
jalemkul at vt.edu
Sat Nov 17 15:26:56 CET 2012
Filed http://redmine.gromacs.org/issues/1037. Let me know if you need anything else.
-Justin
On 11/17/12 9:19 AM, Szilárd Páll wrote:
> HI,
>
> This is probably a bug in the CPU detection or CMake compiler option selection.
>
> Justin, could you please file a bug report with your
> CMakeCache.txt, CMakeFiles/CMakeOutput.log, CMakeFiles/CMakeError.log?
>
> I assume your GMX_SUGGESTED_CPU_ACCELERATION=SSE4.1 as well as
> the GMX_CPU_ACCELERATION=SSE4.1 but probably a header or compiler option test
> failed later on.
>
>
> This is not the first and probably not the last problem of this nature and is
> exactly the type of error which I have been referring to (see gerrit #1687) when
> suggesting that that we need to:
> - either reorganize detection code like CPU detection such that failure are
> detected and the configure process either exits with failure or with a *visible*
> warning (e.g. at the end of the configura output);
> - or add code that checks every CPU acceleration type similarly to the recently
> merged AVX check (https://gerrit.gromacs.org/#/c/1678/).
>
> Either way, we can not set GMX_CPU_ACCELERATION to whatever the suggested value
> is unless we make sure that we can compile with those settings. We can not leave
> the user with a bunch of cryptic compiler errors regardless whether our
> detection trips or their compiler is not up to the job.
>
> Cheers,
> --
> Szilárd
>
> --
> Szilárd
>
>
> On Sat, Nov 17, 2012 at 1:47 PM, Justin Lemkul <jalemkul at vt.edu
> <mailto:jalemkul at vt.edu>> wrote:
>
>
>
> On 11/17/12 12:20 AM, Roland Schulz wrote:
>
> Hi,
>
> looks like the CFLAGS are missing -msse4.1 . Check whether that is indeed
> missing from CMAKE_C_FLAGS (CMakeCache.txt) and add it if it is. Then
> check if
> you delete CMakeCache.txt and rerun cmake, if it doesn't forget to add
> it again
> (to make sure we don't have some bug in cmake).
>
>
> Thanks, Roland. Adding -msse4.1 does the trick. Re-running cmake after
> deleting CMakeCache.txt does not fix the problem, as the flag is still
> missing, with CMAKE_C_FLAGS set to " -Wall -Wno-unused -Wunused-value ".
> Anything else I should try, or that would be useful to post to help diagnose?
>
> -Justin
>
> On Fri, Nov 16, 2012 at 11:42 PM, Justin Lemkul <jalemkul at vt.edu
> <mailto:jalemkul at vt.edu>
> <mailto:jalemkul at vt.edu <mailto:jalemkul at vt.edu>>> wrote:
>
>
> Hi All,
>
> Quick question about compiling the latest release-4-6 from git. It
> seems that I
> can't get it to compile. I get the following:
>
> First a warning here
> ...
> [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/__gmx_arpack.c.o
>
> /home/jalemkul/git/release-4-__6/include/thread_mpi/atomic/__gcc_x86.h:
> In function
> ‘int tMPI_Atomic_cas(tMPI_Atomic_t*__, int, int)’:
>
> /home/jalemkul/git/release-4-__6/include/thread_mpi/atomic/__gcc_x86.h:135:
> warning:
> comparison between signed and unsigned integer expressions
> [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/__viewit.c.o
> ...
>
> and then the actual failure
> ...
> [ 9%] Building C object src/gmxlib/CMakeFiles/gmx.dir/__mshift.c.o
> In file included from
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:24,
> from
> /home/jalemkul/git/release-4-__6/include/gmx_x86_simd_single.__h:35,
> from
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:60:
> /usr/lib/gcc/i686-linux-gnu/4.__4.5/include/smmintrin.h:32: error:
> #error "SSE4.1
> instruction set not enabled"
> In file included from
> /home/jalemkul/git/release-4-__6/include/gmx_x86_simd_single.__h:35,
> from
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:60:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:82:
> error: expected
> declaration specifiers or ‘...’ before ‘__m128’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_printxmm_ps’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:86:
> warning: implicit
> declaration of function ‘_mm_storeu_ps’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:86:
> error: ‘xmm’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:86:
> error: (Each
> undeclared identifier is reported only once
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:86:
> error: for each
> function it appears in.)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: At top
> level:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:92:
> error: expected
> declaration specifiers or ‘...’ before ‘__m128’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_printxmmsum_ps’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:96:
> error: ‘xmm’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: At top
> level:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__102:
> error: expected
> declaration specifiers or ‘...’ before ‘__m128d’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_printxmm_pd’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__106:
> warning: implicit
> declaration of function ‘_mm_storeu_pd’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__106:
> error: ‘xmm’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: At top
> level:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__111:
> error: expected
> declaration specifiers or ‘...’ before ‘__m128d’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_printxmmsum_pd’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__115:
> error: ‘xmm’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: At top
> level:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__121:
> error: expected
> declaration specifiers or ‘...’ before ‘__m128i’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_printxmm_epi32’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__125:
> warning: implicit
> declaration of function ‘_mm_storeu_si128’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__125:
> error: ‘__m128i’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__125:
> error: expected
> expression before ‘)’ token
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h: In function
> ‘gmx_mm_check_and_reset___overflow’:
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__136:
> warning: implicit
> declaration of function ‘_mm_getcsr’
> /home/jalemkul/git/release-4-__6/include/gmx_x86_sse4_1.h:__143:
> warning: implicit
> declaration of function ‘_mm_setcsr’
> In file included from
> /home/jalemkul/git/release-4-__6/include/gmx_x86_simd_single.__h:36,
> from
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:60:
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:
> At top
> level:
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:46:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_invsqrt_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:58:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_sqrt_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:73:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_inv_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:83:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_abs_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:93:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_log_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:190:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_exp2_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:248:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_exp_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:309:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_erf_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:474:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_erfc_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:705:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_pmecorrF_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:783:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_pmecorrV_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:830:
> error:
> expected ‘)’ before ‘x’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:920:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_sin_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:932:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_cos_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:941:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_tan_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:955:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_asin_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:1024:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_acos_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:1060:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_atan_ps’
>
> /home/jalemkul/git/release-4-__6/include/gmx_math_x86_sse4_1___single.h:1117:
> error:
> expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before
> ‘gmx_mm_atan2_ps’
> In file included from
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:60:
>
> /home/jalemkul/git/release-4-__6/include/gmx_x86_simd_single.__h:50:
> error: expected
> ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘gmx_mm_calc_rsq_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c: In function
> ‘dih_angle_sse’:
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1229: error:
> ‘__m128’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1229: error:
> expected ‘;’
> before ‘rijx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1230: error:
> expected ‘;’
> before ‘rkjx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1231: error:
> expected ‘;’
> before ‘rklx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1232: error:
> expected ‘;’
> before ‘mx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1233: error:
> expected ‘;’
> before ‘nx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1234: error:
> expected ‘;’
> before ‘cx_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1235: error:
> expected ‘;’
> before ‘cn_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1236: error:
> expected ‘;’
> before ‘s_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1237: error:
> expected ‘;’
> before ‘phi_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1238: error:
> expected ‘;’
> before ‘ipr_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1240: error:
> expected ‘;’
> before ‘iprm_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1241: error:
> expected ‘;’
> before ‘nrkj2_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1242: error:
> expected ‘;’
> before ‘nrkj_m2_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1243: error:
> expected ‘;’
> before ‘p_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1244: error:
> expected ‘;’
> before ‘fmin_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253: error:
> expected ‘;’
> before ‘tmp’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253: error:
> ‘rijx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253:
> warning: implicit
> declaration of function ‘_mm_load_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253: error:
> ‘rijy_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253: error:
> ‘rijz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253: error:
> ‘tmp’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1253:
> warning: implicit
> declaration of function ‘_MM_TRANSPOSE4_PS’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1254: error:
> expected ‘;’
> before ‘tmp’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1254: error:
> ‘rkjx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1254: error:
> ‘rkjy_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1254: error:
> ‘rkjz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1255: error:
> expected ‘;’
> before ‘tmp’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1255: error:
> ‘rklx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1255: error:
> ‘rkly_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1255: error:
> ‘rklz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1257: error:
> ‘mx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1257:
> warning: implicit
> declaration of function ‘_mm_sub_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1257:
> warning: implicit
> declaration of function ‘_mm_mul_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1257: error:
> ‘my_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1257: error:
> ‘mz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1261: error:
> ‘nx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1261: error:
> ‘ny_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1261: error:
> ‘nz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1265: error:
> ‘cx_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1265: error:
> ‘cy_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1265: error:
> ‘cz_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1269: error:
> ‘cn_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1269:
> warning: implicit
> declaration of function ‘gmx_mm_sqrt_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1269:
> warning: implicit
> declaration of function ‘_mm_add_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1271: error:
> ‘s_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1273: error:
> ‘phi_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1273:
> warning: implicit
> declaration of function ‘gmx_mm_atan2_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1274:
> warning: implicit
> declaration of function ‘_mm_store_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1276: error:
> ‘ipr_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1279:
> warning: implicit
> declaration of function ‘_mm_movemask_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1289: error:
> ‘iprm_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1290: error:
> ‘iprn_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1293: error:
> expected ‘;’
> before ‘tmp’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1294: error:
> expected ‘;’
> before ‘tmp’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1296: error:
> ‘nrkj2_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1301:
> warning: implicit
> declaration of function ‘_mm_max_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1301: error:
> ‘fmin_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1302: error:
> ‘nrkj_1_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1302:
> warning: implicit
> declaration of function ‘gmx_mm_invsqrt_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1303: error:
> ‘nrkj_2_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1304: error:
> ‘nrkj_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1308: error:
> ‘nrkj_m2_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1308:
> warning: implicit
> declaration of function ‘gmx_mm_inv_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1309: error:
> ‘nrkj_n2_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1314: error:
> ‘p_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1318: error:
> ‘q_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c: In function
> ‘pdihs_noener_sse’:
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1672: error:
> ‘__m128’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1672: error:
> expected ‘;’
> before ‘mdphi_SSE’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1721: error:
> ‘mdphi_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1722:
> warning: implicit
> declaration of function ‘gmx_mm_sincos_ps’
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1722: error:
> ‘sin_SSE’
> undeclared (first use in this function)
> /home/jalemkul/git/release-4-__6/src/gmxlib/bondfree.c:1722: error:
> ‘cos_SSE’
> undeclared (first use in this function)
> [ 9%] make[2]: *** [src/gmxlib/CMakeFiles/gmx.__dir/bondfree.c.o]
> Error 1
> make[2]: *** Waiting for unfinished jobs....
> Building C object src/gmxlib/CMakeFiles/gmx.dir/__pargs.c.o
> make[1]: *** [src/gmxlib/CMakeFiles/gmx.__dir/all] Error 2
> make: *** [all] Error 2
>
>
> Given that I'm fairly unfamiliar with the new build system (read:
> cmake noob), I
> don't know a lot about what you might need to see from my
> configuration. I'm
> linking against fftw-3.3.2 and cmake detected SSE4.1 optimization
> for our system
> (a reasonably new GPU workstation).
>
> $ uname -a
> Linux hermes 2.6.35-32-generic #67-Ubuntu SMP Mon Mar 5 19:35:26
> UTC 2012 i686
> GNU/Linux
>
> gcc is version 4.4.5.
>
> Please let me know what I need to provide to help diagnose what's
> going on. Is
> the optimization not being detected properly? How would I find
> that out?
>
> -Justin
> --
> ==============================__==========
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu <http://vt.edu> <http://vt.edu> | (540) 231-9080
> <tel:%28540%29%20231-9080>
>
> http://www.bevanlab.biochem.__vt.edu/Pages/Personal/justin
> <http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================__==========
> --
> gmx-developers mailing list
> gmx-developers at gromacs.org <mailto:gmx-developers at gromacs.org>
> <mailto:gmx-developers at __gromacs.org <mailto:gmx-developers at gromacs.org>>
>
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> <mailto:gmx-developers-request at gromacs.org>
> <mailto:gmx-developers-__request at gromacs.org
> <mailto:gmx-developers-request at gromacs.org>>.
>
>
>
>
>
>
>
> --
> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
> <http://cmb.ornl.gov> <http://cmb.ornl.gov>
>
> 865-241-1537, ORNL PO BOX 2008 MS6309
>
>
>
> --
> ==============================__==========
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
> http://www.bevanlab.biochem.__vt.edu/Pages/Personal/justin
> <http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================__==========
> --
> gmx-developers mailing list
> gmx-developers at gromacs.org <mailto:gmx-developers at gromacs.org>
> http://lists.gromacs.org/__mailman/listinfo/gmx-__developers
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> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-developers-request at __gromacs.org
> <mailto:gmx-developers-request at gromacs.org>.
>
>
>
>
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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