[gmx-developers] When will 4.6 kernels be back?

ms devicerandom at gmail.com
Sun Nov 18 20:25:29 CET 2012


On 14/11/12 19:44, Christoph Junghans wrote:
> 2012/11/14 ms <devicerandom at gmail.com>:
>> On 13/11/12 19:26, Christoph Junghans wrote:
>>
>>>>     ERROR 1 [file grompp.mdp]:
>>>>       AdResS is currently disabled
>>>
>>> Sorry, I think, there was a misunderstanding.
>>> 5ba7125c5972f2aafde2310eaa4a345cbac55da5^ is the last revision, which
>>> has AdResS and SSE kernels.
>>> We are working on re-enabling AdResS, but it will take a while.
>>>
>>
>> Awww. Ok, sorry. Now, what I would need (I am just teaching myself
>> adress...) is the last revision of gmx which was both adress-enabled and
>> with fast kernels.
>   5ba7125c5972f2aafde2310eaa4a345cbac55da5 is the revision, where Erik
> removed the assembly kernels, hence
> 5ba7125c5972f2aafde2310eaa4a345cbac55da5^ (mind the ^) is the one
> which still has them.
> Does that work for you?

Thanks for pointing at the missed ^, but still the result is the same: 
adress is disabled.

---
ERROR 1 [file grompp.mdp]:
   AdResS is currently disabled
---

Steps as before except for the git reset:

---
  git clone git://git.gromacs.org/gromacs.git

  cd gromacs

  git checkout --track -b release-4-6 origin/release-4-6

  git reset --soft 5ba7125c5972f2aafde2310eaa4a345cbac55da5^

  mkdir build-single-5ba7

  mkdir exec-single-5ba7

  cd build-single-5ba7/

  CC=mpicc CXX=mpiCC cmake ../ -DGMX_MPI=ON -DGMX_DEFAULT_SUFFIX=OFF
-DGMX_BINARY_SUFFIX="_git4.6" -DGMX_LIBS_SUFFIX="_git4.6" -DGMX_GPU=OFF
-DCMAKE_INSTALL_PREFIX=../exec-single-5ba7/

make -j 8

make install

---

thanks and sorry!
M.

>
>>
>> Any chance of remembering what it was? :)
>>
>> thanks!
>>
>> M.
>>
>>>>
>>>> does it mean AdResS is disabled in that revision or did I forget some
>>>> compilation flag?
>>>>
>>>> thanks!
>>>> M.
>>>>
>>>>
>>>> --
>>>> Massimo Sandal, Ph.D.
>>>> http://devicerandom.org
>>>> --
>>>> gmx-developers mailing list
>>>> gmx-developers at gromacs.org
>>>> http://lists.gromacs.org/mailman/listinfo/gmx-developers
>>>> Please don't post (un)subscribe requests to the list. Use the www
>>>> interface
>>>> or send it to gmx-developers-request at gromacs.org.
>>>
>>>
>>>
>>>
>>> --
>>> Christoph Junghans
>>> Web: http://www.compphys.de
>>>
>>
>>
>> --
>> Massimo Sandal, Ph.D.
>> http://devicerandom.org
>> --
>> gmx-developers mailing list
>> gmx-developers at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-developers
>> Please don't post (un)subscribe requests to the list. Use the www interface
>> or send it to gmx-developers-request at gromacs.org.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>


-- 
Massimo Sandal, Ph.D.
http://devicerandom.org



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