[gmx-developers] make install-mdrun

[Carsten Kutzner]

On Oct 19, 2012, at 5:19 PM, Roland Schulz <roland at utk.edu> wrote:

> 
> 
> On Fri, Oct 19, 2012 at 10:51 AM, Carsten Kutzner <ckutzne at gwdg.de> wrote:
> 
> On Oct 19, 2012, at 4:21 PM, Roland Schulz <roland at utk.edu> wrote:
> 
> > Hi,
> >
> > yes it should work. Is your version the latest 4.6 and contains Mark fix (https://gerrit.gromacs.org/#/c/1516/)?
> Yes, this is what happens if I get the newest version:
> 
> =============================
> git clone git://git.gromacs.org/gromacs.git
> cd gromacs
> git checkout --track -b release-4-6 origin/release-4-6
> mkdir build
> cd build
> cmake .. -DCMAKE_INSTALL_PREFIX=/home/ckutzne/test
> make -j 4
> make install-mdrun
> 
> [100%] Installing mdrun
> -- Install configuration: "Release"
> -- Install component: "libraries"
> CMake Error at /home/ckutzne/installations/gromacs/build/src/gmxlib/cmake_install.cmake:38 (FILE):
>   file INSTALL cannot find
>   "/home/ckutzne/installations/gromacs/build/src/gmxlib/CMakeFiles/CMakeRelink.dir/libgmx.so.6".
> Call Stack (most recent call first):
>   /home/ckutzne/installations/gromacs/build/src/cmake_install.cmake:43 (INCLUDE)
>   /home/ckutzne/installations/gromacs/build/cmake_install.cmake:39 (INCLUDE)
> 
> 
> make[3]: *** [src/kernel/CMakeFiles/install-mdrun] Error 1
> make[2]: *** [src/kernel/CMakeFiles/install-mdrun.dir/all] Error 2
> make[1]: *** [src/kernel/CMakeFiles/install-mdrun.dir/rule] Error 2
> make: *** [install-mdrun] Error 2
> =============================
> 
> The CMakeRelink.dir directory is empty.
> No clue why it is trying to use the CMakeRelink directory. What cmake version and what operating system is that?
cmake version 2.8.6
openSUSE 12.1 Asparagus
Linux 3.1.10-1.16

but it also happens on

Scientific Linux 5.7
2.6.18

> What does "grep RPATH CMakeCache.txt" give?
> 
> Roland
> 
> 
> Carsten
> 
> 
> >
> > Roland
> >
> > On Fri, Oct 19, 2012 at 9:51 AM, Carsten Kutzner <ckutzne at gwdg.de> wrote:
> > Hi,
> >
> > is
> >
> > cmake <options>
> > make mdrun
> > make install-mdrun
> >
> > supposed to work in 4.6? For me it is not, only make and make install work.
> >
> > Carsten
> >
> >
> > --
> > gmx-developers mailing list
> > gmx-developers at gromacs.org
> > http://lists.gromacs.org/mailman/listinfo/gmx-developers
> > Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-developers-request at gromacs.org.
> >
> >
> >
> >
> >
> >
> >
> > --
> > ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
> > 865-241-1537, ORNL PO BOX 2008 MS6309
> > --
> > gmx-developers mailing list
> > gmx-developers at gromacs.org
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> 
> 
> --
> Dr. Carsten Kutzner
> Max Planck Institute for Biophysical Chemistry
> Theoretical and Computational Biophysics
> Am Fassberg 11, 37077 Goettingen, Germany
> Tel. +49-551-2012313, Fax: +49-551-2012302
> http://www.mpibpc.mpg.de/grubmueller/kutzner
> 
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> 
> 
> 
> 
> 
> 
> 
> -- 
> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
> 865-241-1537, ORNL PO BOX 2008 MS6309
> -- 
> gmx-developers mailing list
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--
Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics
Am Fassberg 11, 37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
http://www.mpibpc.mpg.de/grubmueller/kutzner