[gmx-developers] Error occurs when compiling gromacs using vtcc

[Theodore Si]

I edited that file, and some other files, all the same problem(I wonder 
why just 3 or 4 files have that problem). I can compile now.
Howerver, a new problem has arisen:

../../lib/libgromacs_mpi.so.0.0.0: undefined reference to 
`pomp_rd_table'
../../lib/libgromacs_mpi.so.0.0.0: undefined reference to `POMP_MAX_ID'
collect2: ld returned 1 exit status
make[2]: *** [bin/template] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2


于2014年8月1日 18:16:36,Theodore Si写到:
> I tried to merge them to one line, it worked.
> But there are many multi-line comments, it is impossible to change
> them one by one.
>
>
> 于2014年8月1日 17:38:28,Erik Lindahl写到:
>> Try adding a backslash at the end of line 24.
>>
>> Cheers,
>>
>> Erik
>>
>> On 01 Aug 2014, at 11:09, Theodore Si <sjyzhxw at gmail.com
>> <mailto:sjyzhxw at gmail.com>> wrote:
>>
>>> Hi all,
>>>
>>> Does anyone know the instrumentation tool Vampir Trace? I am using
>>> it, and I want to instrument the gromacs code.
>>> So my cmake options are:
>>>
>>> cmake .. -DCMAKE_BUILD_OWN_FFTW=ON -DCMAKE_C_COMPILER=vtcc
>>> -DCMAKE_CXX_COMPILER=vtcxx -DGMX_MPI=on
>>> -DCMAKE_INSTALL_PREFIX=/home/theo/gmx
>>> -CUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda-5.5
>>>
>>> Vampir Trace includes some binaries, like vtcc and vtcxx above. They
>>> behave like compiler but are actually compiler wrapper.
>>> For example, you can write main.c and vtcc main.c -o main, and the
>>> binary main will be built and you can run it like a normal binary
>>> file, but during the run, some files will be generated and can be
>>> analysed latter.
>>>
>>> However, error occurs:
>>>
>>> [  2%] Building C object
>>> src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o
>>>
>>> /home/theo/gromacs-5.0/src/external/tng_io/src/compression/tng_compress.c:25:
>>>
>>> error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘speed’
>>> /home/theo/gromacs-5.0/src/external/tng_io/src/compression/tng_compress.c:
>>>
>>> In function ‘quantize’:
>>> /home/theo/gromacs-5.0/src/external/tng_io/src/compression/tng_compress.c:80:
>>>
>>> warning: implicit declaration of function ‘verify_input_data’
>>> At top level:
>>> cc1: warning: unrecognized command line option
>>> "-Wno-maybe-uninitialized"
>>> make[2]: ***
>>> [src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o]
>>>
>>> Error 1
>>> make[1]: *** [src/gromacs/CMakeFiles/libgromacs.dir/all] Error 2
>>> make: *** [all] Error 2
>>>
>>> When I open the tng_compress.c, I find that line 25 is just a comment.
>>>
>>> 24 #define SPEED_DEFAULT 2 /* Default to relatively fast compression.
>>> For very      good compression it makes sense to
>>> 25                            choose speed=4 or speed=5 */
>>> 26
>>>
>>> Could you tell me what's going on?
>>>
>>> I'd appreciate you kind help.
>>> --
>>> Gromacs Developers mailing list
>>>
>>> * Please search the archive at
>>> http://www.gromacs.org/Support/Mailing_Lists/GMX-developers_List
>>> before posting!
>>>
>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>>
>>> * For (un)subscribe requests visit
>>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-developers
>>> or send a mail to gmx-developers-request at gromacs.org
>>> <mailto:gmx-developers-request at gromacs.org>.
>>
>>
>>