[gmx-developers] compilation issues in master with gcc 4.8.2

Mark Abraham mark.j.abraham at gmail.com
Sun Mar 16 12:24:01 CET 2014


Sure - I'm just trying to contribute information to the bug report.

Mark


On Sun, Mar 16, 2014 at 11:53 AM, Erik Lindahl
<erik.lindahl at scilifelab.se>wrote:

> Never mind - I did a trivial workaround in https://gerrit.gromacs.org/3272
>
> Cheers,
>
> Erik
>
> On 16 Mar 2014, at 11:46, Mark Abraham <mark.j.abraham at gmail.com> wrote:
>
>  Seems like a known bug http://gcc.gnu.org/bugzilla/show_bug.cgi?id=59071.
> What optimization level was that, David?
>
>  Mark
>
>
> On Sat, Mar 15, 2014 at 1:43 PM, Erik Lindahl <erik.lindahl at scilifelab.se>wrote:
>
>> I'll create a patch tonight, unless somebody else beats me to it :-)
>>
>>  Cheers,
>>
>>  Erik
>>
>>  On 15 Mar 2014, at 13:39, David van der Spoel <spoel at xray.bmc.uu.se>
>> wrote:
>>
>>   On 2014-03-15 12:49, Erik Lindahl wrote:
>>
>> It might be the sizeof() call that screws things up by returning a 64-bit
>> value, in combination with the compiler not understanding that it is a
>> constant.
>>
>> Could you cry changing those sizeof() to "4" and see if that works?
>>
>>  Yes, that works!
>>
>>
>> Cheers,
>>
>> Erik
>>
>> --
>> Erik Lindahl <erik.lindahl at scilifelab.se>
>> Professor of Biophysics
>> Science for Life Laboratory
>> Stockholm University & KTH
>> Office (SciLifeLab): +46 8 524 81567
>> Cell (Sweden): +46 73 4618050
>> Cell (US): 1 267 307 8746
>>
>>
>> On Mar 15, 2014, at 12:19 PM, David van der Spoel <spoel at xray.bmc.uu.se>
>> wrote:
>>
>> On 2014-03-15 11:44, David van der Spoel wrote:
>> In file included from
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/simd.h:126:0,
>>                  from
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/tests/simd.h:79,
>>                  from
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/tests/simd_integer.cpp:39:
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/tests/simd_integer.cpp:
>> In member function 'virtual void
>> gmx::test::{anonymous}::SimdIntegerTest_gmxSimdExtractI_Test::TestBody()':
>>
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/impl_x86_sse2/impl_x86_sse2.h:123:92:
>> error: the last argument must be an 8-bit immediate
>>  #define gmx_simd_extract_fi(x, i)
>> _mm_cvtsi128_si32(_mm_srli_si128((x), sizeof(int) * (i)))
>>
>>                      ^
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/simd.h:665:46: note: in
>> expansion of macro 'gmx_simd_extract_fi'
>>  #    define gmx_simd_extract_i               gmx_simd_extract_fi
>>                                               ^
>>
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/tests/simd_integer.cpp:154:25:
>> note: in expansion of macro 'gmx_simd_extract_i'
>>          extracted_int = gmx_simd_extract_i(simd, 1);
>>                          ^
>>
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/impl_x86_sse2/impl_x86_sse2.h:123:92:
>> error: the last argument must be an 8-bit immediate
>>  #define gmx_simd_extract_fi(x, i)
>> _mm_cvtsi128_si32(_mm_srli_si128((x), sizeof(int) * (i)))
>>
>>                      ^
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/simd.h:665:46: note: in
>> expansion of macro 'gmx_simd_extract_fi'
>>  #    define gmx_simd_extract_i               gmx_simd_extract_fi
>>                                               ^
>>
>> /home/spoel/GG/master/gromacs/src/gromacs/simd/tests/simd_integer.cpp:159:25:
>> note: in expansion of macro 'gmx_simd_extract_i'
>>          extracted_int = gmx_simd_extract_i(simd, 3);
>>
>> Any clues?
>>
>> To follow up: it compiles fine with SSE4.1 but not with SSE2.
>>
>>
>> --
>> David van der Spoel, Ph.D., Professor of Biology
>> Dept. of Cell & Molec. Biol., Uppsala University.
>> Box 596, 75124 Uppsala, Sweden. Phone:    +46184714205.
>> spoel at xray.bmc.uu.se    http://folding.bmc.uu.se
>> --
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>>
>> --
>> David van der Spoel, Ph.D., Professor of Biology
>> Dept. of Cell & Molec. Biol., Uppsala University.
>> Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
>> spoel at xray.bmc.uu.se    http://folding.bmc.uu.se
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