[gmx-developers] valgrind error on grompp

[Roland Schulz]

On Tue, Oct 7, 2014 at 5:22 PM, Szilárd Páll <pall.szilard at gmail.com> wrote:

> Are we not running valgrind in Jenkins? If that's the case this is
> unexpected and likely a bug, right?
>
We only run valgrind on the unit tests. Not the regressiontests.

Roland


> --
> Szilárd
>
>
> On Fri, Oct 3, 2014 at 4:49 PM, Viveca Lindahl <vivecal at kth.se> wrote:
> > I happened to run 'valgrind grompp' on with release-5-0 (a349e4) and get
> 1
> > error:
> >
> > ==31504== 1 errors in context 1 of 1:
> > ==31504== Syscall param write(buf) points to uninitialised byte(s)
> > ==31504==    at 0x5D783B0: __write_nocancel (syscall-template.S:81)
> > ==31504==    by 0x5D05A82: _IO_file_write@@GLIBC_2.2.5 (fileops.c:1261)
> > ==31504==    by 0x5D06F5B: _IO_do_write@@GLIBC_2.2.5 (fileops.c:538)
> > ==31504==    by 0x5D0530F: _IO_file_sync@@GLIBC_2.2.5 (fileops.c:892)
> > ==31504==    by 0x5CFA9D1: fflush (iofflush.c:41)
> > ==31504==    by 0x5D26AE: gmx_fio_close (in
> > /data/viveca/programs/awh/bin/gmx_5)
> > ==31504==    by 0x4DFE81: gmx_grompp (in
> > /data/viveca/programs/awh/bin/gmx_5)
> > ==31504==    by 0x5321DD: gmx::CommandLineModuleManager::run(int, char**)
> > (in /data/viveca/programs/awh/bin/gmx_5)
> > ==31504==    by 0x48C434: main (in /data/viveca/programs/awh/bin/gmx_5)
> > ==31504==  Address 0x404d050 is not stack'd, malloc'd or (recently)
> free'd
> > ==31504==  Uninitialised value was created by a stack allocation
> > ==31504==    at 0x4DACFB: gmx_grompp (in
> > /data/viveca/programs/awh/bin/gmx_5)
> >
> > ... comments?
> >
> >
> > Viveca
> >
> > --
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