[gmx-developers] upcoming downtime on Monday

David van der Spoel spoel at xray.bmc.uu.se
Tue Sep 16 12:19:52 CEST 2014


Seems that we have compiler problems now (full link 
http://jenkins.gromacs.org/job/Gromacs_Gerrit_master/6815/OPTIONS=Compiler=icc%20CompilerVersion=13.0.1%20GMX_GPU=OFF%20GMX_OPENMP=ON%20NTOMP=1%20GMX_THREAD_MPI=OFF%20host=bs_mac,label=bs_mac/console)


11:41:34   The C compiler 
"/opt/intel/composer_xe_2013.5.198/bin/intel64/icc" is not
11:41:34   able to compile a simple test program.
11:41:34
11:41:34   It fails with the following output:
11:41:34
11:41:34    Change Dir: 
/Volumes/workspace/Gromacs_Gerrit_master at 2/5e828153/gromacs/CMakeFiles/CMakeTmp
11:41:34
11:41:34
11:41:34
11:41:34   Run Build Command:"/usr/bin/make" 
"cmTryCompileExec4212583335/fast"
11:41:34
11:41:34   /Applications/Xcode.app/Contents/Developer/usr/bin/make -f
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/build.make
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/build
11:41:34
11:41:34   /opt/local/bin/cmake -E cmake_progress_report
11:41:34 
/Volumes/workspace/Gromacs_Gerrit_master at 2/5e828153/gromacs/CMakeFiles/CMakeTmp/CMakeFiles
11:41:34   1
11:41:34
11:41:34   Building C object
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/testCCompiler.c.o
11:41:34
11:41:34   /opt/intel/composer_xe_2013.5.198/bin/intel64/icc -o
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/testCCompiler.c.o -c
11:41:34 
/Volumes/workspace/Gromacs_Gerrit_master at 2/5e828153/gromacs/CMakeFiles/CMakeTmp/testCCompiler.c
11:41:34
11:41:34
11:41:34   Linking C executable cmTryCompileExec4212583335
11:41:34
11:41:34   /opt/local/bin/cmake -E cmake_link_script
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/link.txt --verbose=1
11:41:34
11:41:34   /opt/intel/composer_xe_2013.5.198/bin/intel64/icc 
-Wl,-search_paths_first
11:41:34   -Wl,-headerpad_max_install_names
11:41:34   CMakeFiles/cmTryCompileExec4212583335.dir/testCCompiler.c.o -o
11:41:34   cmTryCompileExec4212583335
11:41:34
11:41:34   ld: library not found for -lcrt1.10.6.o
11:41:34
11:41:34   make[1]: *** [cmTryCompileExec4212583335] Error 1
11:41:34
11:41:34   make: *** [cmTryCompileExec4212583335/fast] Error 2

-- 
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se


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