[gmx-developers] Missing dihedral define
Zachmann, Martin
m.zachmann at tum.de
Fri Aug 2 16:34:29 CEST 2019
Hello
there is a separate residue for charged GLN (QLN) in the OPLS-forcefield file aminoacids.rtp.
This residue uses the preprocessor define "dih_GLN_chi4_C_C_O_H" for a dihedral parameter set.
However, this macro is not defined anywhere (esp. not in ffbonded.itp with all the others).
The reason why grompp does not complain, is because the function push_bond() uses sscanf
nread = sscanf(line,format,&cc[0],.....
expecting double values. When strings are read instead, the variable nread is zero, and grompp assumes
default values for this dihedral.
If I'm correct, we should either delete the non-existing macro, or have to add values for this dihedral.
Thank you for your time,
regards Martin
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-developers/attachments/20190802/bc5114e9/attachment.html>
More information about the gromacs.org_gmx-developers
mailing list