[gmx-developers] (no subject)

John Whittaker johnwhittake at zedat.fu-berlin.de
Wed Aug 5 19:48:47 CEST 2020


> My structure consist of single strand DNA (26 mer).
> I cut 2 mer from n-teminous and 2 mer from c-terminous of DNA.
> After pdb2gmx command and choose Amber force field ,I got some
> following error like this:
> "Atom P in residue DA 1 was not found in rtp entry DA5 with 30 atoms
> while sorting atoms."

This mailing list is for GROMACS developers. Please direct all GROMACS
usage questions to the GROMACS forum at:


Also, give more information about what you did and include a subject.
"After pdb2gmx command..." is too vague, give the command you used.

This is also useful to read before you ask the forum:


Under section "Atom X in residue YYY not found in rtp entry"



John Whittaker
Ph.D. Candidate
Department of Mathematics and Computer Science
Freie Universität Berlin

+49 0160 936 04221

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