[gmx-developers] The setup of gpu_id has a bug?
dxli75 at 126.com
Tue Mar 10 17:49:40 CET 2020
When I set the gpu_id as 10-15, the GMX always give the message of PP:1,PME:1. And the job run on GPU No.1 instead of No.10-15.
Is there a bug?
GROMACS: gmx mdrun, version 2020.1
Data prefix: /raid/data/dxli/projects/ncovs-1rpb/../../gromacs-2020.1
Working dir: /raid/data/dxli/projects/ncovs-1rpb
gmx mdrun -deffnm test -gpu_id 10 -ntmpi 1 -ntomp 8
Reading file test.tpr, VERSION 2020 (single precision)
1 GPU selected for this run.
Mapping of GPU IDs to the 2 GPU tasks in the 1 rank on this node:
PP tasks will do (non-perturbed) short-ranged interactions on the GPU
PP task will update and constrain coordinates on the CPUPME tasks will do all aspects on the GPU
Using 1 MPI thread
Non-default thread affinity set, disabling internal thread affinity
Using 8 OpenMP threads
Daixi Li Ph.D., Associated Professor
P.I.,Laboratory of Computational Biology
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