[gmx-users] Visualizing Trajectories
kandt at bph.ruhr-uni-bochum.de
Mon Oct 29 14:12:18 CET 2001
Just having joined the mailing list I'd like to start with another idea
of visualizing trajectories without using ngmx:
MolMol is a quite powerful and versatile molecular visualization tool
with the ability to load multiconformational pdb-files.
So here is what's to do:
1.) Convert your trajectory into a nmr-pdb of suitable size
2.) Load this file into MolMol
3.) Select all Molecules by >SelectMol ''< (Those '' are two single '
4.) Start playing trajectory by >StartAnim<
5.) There you are!
6.) If you like a different look try for example the RIBBON buttom
Display Quality can be changed via the >DrawPrec N< command. N can be
any number between 1 and whatever your hardware can handle.
MolMol is available for free at:
More information about the gromacs.org_gmx-users