[gmx-users] editconf

Y. U. Sasidhar sasidhar at chem.iitb.ac.in
Tue Apr 16 13:28:08 CEST 2002


David van der Spoel wrote:

> On Tue, 16 Apr 2002, Nguyen Hoang Phuong wrote:
>
> >
> >Hi All,
> >
> >there is an option -d in the program editconf. Is it the distant between
> >the center of mass of the solute and the box or the minimum solote-to-wall
> >distance?
> The latter, otherwise it would be just half the box size

i.e., box length = length of molecule in a given direction ( X or Y or Z ) + d
?

>
> --
> Groeten, David.
> ________________________________________________________________________
> Dr. David van der Spoel,        Biomedical center, Dept. of Biochemistry
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--
 Sasidhar
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