[gmx-users] short and long range coulomb with pme
nicolis at guideo.fr
nicolis at guideo.fr
Mon Apr 29 22:30:18 CEST 2002
Hello,
I simulate a CA2+ in a 3 nm SPC water box with pme (actually in different box sizes to see the effect on free energy) without any counter ion.
When I check the interactions with g_energy I get constant 0 for the LR coulomb interactions for CA-CA, CA-SOL and SOL-SOL, but I get a value for the total LR_Coulomb.
If I check the SR Coulomb or the LJ, I get the totals equal to the sum of the CA-CA, CA-SOL and SOL-SOL contributions.
Why this is not the case for LR coulomb? Am I missing soemthing about the parameters rlist and rcoulomb? Should I give a value to rcoulomb-switch?
Thank you,
Yiannis
Here is the output of g_energy:
Energy Average RMSD Fluct. Drift Tot-Drift
-------------------------------------------------------------------------------
LJ (SR) 6313.15 157.943 157.918 -0.0670855 -9.8617
Coulomb (SR) -42713.7 277.928 247.32 2.98795 439.234
Coulomb (LR) -1602.46 121.67 9.01607 2.85928 420.32
Coul-SR:CA-CA 0 0 0 0 0
LJ:CA-CA 0 0 0 0 0
Coul-LR:CA-CA 0 0 0 0 0
Coul-SR:CA-SOL -1076.75 248.77 38.4408 5.79186 851.415
LJ:CA-SOL 81.3924 21.6135 15.8288 -0.34681 -50.9818
Coul-LR:CA-SOL 0 0 0 0 0
Coul-SR:SOL-SOL -41637 244.734 213.862 -2.80391 -412.18
LJ:SOL-SOL 6231.76 156.003 155.551 0.279725 41.1201
Coul-LR:SOL-SOL 0 0 0 0 0
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