[gmx-users] Re: DNA and GROMACS/GROMOS87
K.A. Feenstra
Feenstra at chem.vu.nl
Mon Dec 2 08:18:08 CET 2002
Graham Smith wrote:
>
> As Anton and John say, though, this looks like a pretty poor
> forcefield. I only used it for someone who'd built a DNA-protein
> model with bad contacts and just wanted to minimize them away.
> I bet it won't work with full MD.
It should't be *that* bad! ;-) If you could do EM, also MD should
work. If the results are sensible, is another matter...
--
Groetjes,
Anton
________ ___________________________________________________________
| | Anton Feenstra |
| . | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
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| |---- | Tel: +31 20 44 47608 - Fax: +31 20 44 47610 |
| ' __ | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
| / \ |-----------------------------------------------------------|
| ( ) | Dept. of Biophysical Chemistry - University of Groningen |
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| __ | Tel +31 50 363 4327 - Fax +31 50 363 4800 |
| / \ | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton |
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