[gmx-users] itp and rtp file about polymer!!!!!!!!!!
nanyu101
nanyu101 at sina.com
Fri Dec 13 08:43:36 CET 2002
Hi,
I am very boring about how to create a topology of polyester.Would you please give me some advices on how to create a block for my polyester.CH3COOCH2CH2-(CH2COOCH(CH3))--CH2COOCH2CH3.I have created it rtp file:
[ ESF ]
[ atoms ]
C1 CH3 0.000 4
C2 C 0.180 2
O1 OS -0.360 2
C3 CS1 0.180 2
O2 OM 0.000 3
C4 CH3 0.000 1
[ bonds ]
C3 +C1
C3 C4
C3 O1
O1 C2
O2 C2
C2 C1
[ impropers ]
C1 C2 O1 O2
[ ESL ]
[ atoms ]
C1 CH2 0.000 1
C2 C 0.180 2
O1 OS -0.360 2
C3 CS2 0.180 2
O2 OM 0.000 3
C4 CH3 0.000 4
[ bonds ]
-C3 C1
C1 C2
C2 O2
O1 C2
O1 C3
C3 C4
[ impropers ]
C1 C2 O1 O2
[ EST ]
[ atoms ]
C1 CH2 0.000 1
C2 C 0.180 2
O1 OS -0.360 2
C3 CS1 0.180 2
O2 OM 0.000 3
C4 CH3 0.000 4
[ bonds ]
-C3 C1
C1 C2
C2 O1
C2 O2
O1 C3
C3 C4
[ impropers ]
C1 C2 O1 O2
ESF denotes the first monomer;EST denotes the middle of monomers;ESL denotes the last monomer;Should I do this three molecular type? By the way,How can I create its itp file?SHould I create three itp for each of them?If so,how to manage it?Thanks!!I am a novice in Gromacs.ANy detailed information is appreciated.
Best wishes,
Xianhui Wu
¡¡¡¡
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡
______________________________________
===================================================================
More information about the gromacs.org_gmx-users
mailing list