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[Xavier Periole]

Hi Senthil,

if you know the atoms or water molecules you have to
erase, you can create an index by hand (using a script)
that contains the atoms you want to erase
(or keep). The easier is probably to create an index
(the format is very simple) with the atoms to erase, the use
make_ndx to create an index with what you want to keep.
And then use editconf with this index to keep the part
you want. 

Xavier