[gmx-users] compilation ok on Mac, execution not ok

Christopher Yip christopher.yip at utoronto.ca
Thu Dec 26 21:38:39 CET 2002

You will need to check your /lib/cpp link..

Create a soft link from /lib for cpp to the following

i.e. sudo ln -s /usr/libexec/gcc/darwin/ppc/2.95.2/cpp /lib/cpp

There's a problem with the latest version of Darwin cpp in that if you link to


you end up with grompp errors...

my student figured this out...

This problem surfaced at least for us when we started using 10.2.3...


Christopher M. Yip, Ph.D., P.Eng.
Associate Professor - Canada Research Chair in Molecular Imaging
Department of Chemical Engineering and Applied Chemistry
Institute of Biomaterials and Biomedical Engineering
Department of Biochemistry
University of Toronto
407 Rosebrugh Building, 4 Taddle Creek Rd.
Toronto, Ontario CANADA M5S 3G9
Office:(416) 978-7853; Lab:(416) 946-5022; Fax: (416) 978-4317;
e-mail: christopher.yip at utoronto.ca
WWW: http://bigten.ibme.utoronto.ca

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