[gmx-users] Compiling on SGI
K.A.Feenstra
k.a.feenstra at chem.rug.nl
Fri Jan 4 13:06:31 CET 2002
Hi,
This might seem weird, one of the developers asking a compilation problem
question on the users list. But I just moved to a new university, and
systems there have (apparently) been installed slightly differently...
Here we go:
I compiled and installed fftw successfully in $HOME/progs/fftw
Then I issue:
#> setenv LDFLAGS -L$HOME/progs/fftw/lib
#> setenv CPPFLAGS -I$HOME/progs/fftw/include
#> ./configure --prefix=$HOME/progs/gromacs
As per the installation instructions. That gets me:
checking build system type... mips-sgi-irix6.5
checking host system type... mips-sgi-irix6.5
[...SNIP...]
checking whether cc accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS... no
*******************************************************************
* Sorry, these optimization settings don't seem to work for *
* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
*******************************************************************
[...SNIP...]
checking for sqrt in -lm... no
configure: error: No math library found
So, that means it is time to check some things:
#> cc -version
MIPSpro Compilers: Version 7.2.1
#> f77 -version
MIPSpro Compilers: Version 7.2.1
#> hinv | head -3
1 270 MHZ IP30 Processor
CPU: MIPS R12000 Processor Chip Revision: 2.3
FPU: MIPS R12010 Floating Point Chip Revision: 0.0
> l /usr/lib*/libm.*
-r--r--r-- 1 root sys 213K Feb 4 2000 /usr/lib/libm.a
-r--r--r-- 1 root sys 103K Oct 4 14:28 /usr/lib/libm.so
lrwxr-xr-x 1 root sys 13b Feb 4 2000 /usr/lib32/libm.so -> mips4/libm.so
lrwxr-xr-x 1 root sys 13b Feb 4 2000 /usr/lib64/libm.so -> mips4/libm.so
So, it seems that the earlier SGI compilation problem questions don't apply,
since they refered to using gcc in stead of SGI cc. The main question is now,
is this a result of a poorly installed system, or is there a fix/workaround.
I wouldn't like to bother my 'new' sysadmin unless I'm sure he needs to fix
something...
I did notice messages like:
configure:1998: cc --version </dev/null >&5
cc ERROR: --version not allowed in non XPG4 environment
cc ERROR parsing --version: unknown flag
cc ERROR: no source or object file given
in the config.log, but frankly that doesn't tell me anything except that
it is probably important... ;-)
I'll attach the full .configure and hinv outputs as well as config.log...
--
Groetjes,
Anton
_____________ _____________________________________________________
| | Anton Feenstra Dept. of Biophysical Chemistry |
| _ _ ___,| K.A.Feenstra at chem.rug.nl University of Groningen |
| / \ / \'| | | Tel +31 50 363 4327 Nijenborgh 4 |
|( | )| | | Fax +31 50 363 4800 9747 AG Groningen |
| \_/ \_/ | | | http://md.chem.rug.nl/~anton The Netherlands |
| | "There's No Room For the Weak" (Joy Division) |
|_____________|_____________________________________________________|
-------------- next part --------------
checking build system type... mips-sgi-irix6.5
checking host system type... mips-sgi-irix6.5
checking for a BSD compatible install... config/install-sh -c
checking whether build environment is sane... yes
checking for mawk... no
checking for gawk... no
checking for nawk... nawk
checking whether make sets ${MAKE}... yes
checking for cc... cc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for executable suffix...
checking for object suffix... o
checking whether we are using the GNU C compiler... no
checking whether cc accepts -g... yes
checking for style of include used by make... none
checking dependency style of cc... none
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... no
checking whether f77 accepts -g... yes
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries... -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking how to run the C preprocessor... cc -E
MIPSpro Compilers: Version 7.2.1
MIPSpro Compilers: Version 7.2.1
checking whether cc accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS... no
*******************************************************************
* Sorry, these optimization settings don't seem to work for *
* your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
*******************************************************************
checking whether f77 accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -OPT:cray_ivdep=TRUE... f77 ERROR parsing -r12000: unknown flag
yes
checking for ident... /usr/sbin/ident
checking whether the compiler supports ident... yes
checking for non-GNU ld... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependant libraries... pass_all
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 12289
checking command to parse /usr/bin/nm -B output from cc object... failed
checking for objdir... .libs
checking for ranlib... :
checking for strip... strip
checking if cc static flag works... no
checking for cc option to produce PIC...
checking if cc PIC define -DPIC works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/bin/ld -n32) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... no
checking dynamic linker characteristics... irix6.5 ld.so
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for f77 option to produce PIC...
checking if f77 PIC define -DPIC works... no
checking if f77 supports -c -o file.o... no
checking whether the f77 linker (/usr/bin/ld -n32) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... no
checking dynamic linker characteristics... irix6.5 ld.so
checking whether ln -s works... yes
checking for sqrt in -lm... no
configure: error: No math library found
ry found
-------------- next part --------------
1 270 MHZ IP30 Processor
CPU: MIPS R12000 Processor Chip Revision: 2.3
FPU: MIPS R12010 Floating Point Chip Revision: 0.0
Main memory size: 768 Mbytes
Xbow ASIC: Revision 1.4
Instruction cache size: 32 Kbytes
Data cache size: 32 Kbytes
Secondary unified instruction/data cache size: 2 Mbytes
Integral SCSI controller 0: Version QL1040B (rev. 2), single ended
Disk drive: unit 1 on SCSI controller 0
Disk drive: unit 3 on SCSI controller 0
Integral SCSI controller 1: Version QL1040B (rev. 2), single ended
Disk drive: unit 1 on SCSI controller 1
IOC3 serial port: tty1
IOC3 serial port: tty2
IOC3 parallel port: plp1
Graphics board: ESI
Integral Fast Ethernet: ef0, version 1, pci 2
Iris Audio Processor: version RAD revision 12.0, number 1
-------------- next part --------------
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by GROMACS configure 3.0.5, which was
generated by GNU Autoconf 2.52. Invocation command line was
$ ./configure --prefix=/home/sgifar/feenstra/progs/gromacs
## ---------- ##
## Platform. ##
## ---------- ##
hostname = hexine.chem.vu.nl
uname -m = IP30
uname -r = 6.5
uname -s = IRIX64
uname -v = 07091544
/usr/bin/uname -p = mips
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH = /usr/sbin:/usr/bsd:/sbin:/usr/bin:/usr/bin/X11:.:/usr/local/bin:/usr/slocal/bin:/usr/local/bin:/usr/freeware/bin:/usr/craysoft/nqe/bin
## ------------ ##
## Core tests. ##
## ------------ ##
configure:1188: PATH=".;."; conftest.sh
./configure[1189]: conftest.sh: not found
configure:1191: $? = 127
configure:1231: checking build system type
configure:1249: result: mips-sgi-irix6.5
configure:1256: checking host system type
configure:1270: result: mips-sgi-irix6.5
configure:1289: checking for a BSD compatible install
configure:1338: result: config/install-sh -c
configure:1349: checking whether build environment is sane
configure:1392: result: yes
configure:1425: checking for mawk
configure:1451: result: no
configure:1425: checking for gawk
configure:1451: result: no
configure:1425: checking for nawk
configure:1440: found /usr/bin/nawk
configure:1448: result: nawk
configure:1458: checking whether make sets ${MAKE}
configure:1478: result: yes
configure:1954: checking for cc
configure:1969: found /usr/bin/cc
configure:1977: result: cc
configure:1995: checking for C compiler version
configure:1998: cc --version </dev/null >&5
cc ERROR: --version not allowed in non XPG4 environment
cc ERROR parsing --version: unknown flag
cc ERROR: no source or object file given
configure:2001: $? = 2
configure:2003: cc -v </dev/null >&5
cc ERROR: no source or object file given
configure:2006: $? = 2
configure:2008: cc -V </dev/null >&5
cc WARNING: -V is ignored
cc ERROR: no source or object file given
configure:2011: $? = 2
configure:2031: checking for C compiler default output
configure:2034: cc -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c >&5
configure:2037: $? = 0
configure:2066: result: a.out
configure:2071: checking whether the C compiler works
configure:2077: ./a.out
configure:2080: $? = 0
configure:2095: result: yes
configure:2102: checking whether we are cross compiling
configure:2104: result: no
configure:2107: checking for executable suffix
configure:2109: cc -o conftest -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c >&5
configure:2112: $? = 0
configure:2134: result:
configure:2140: checking for object suffix
configure:2158: cc -c -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
configure:2161: $? = 0
configure:2180: result: o
configure:2184: checking whether we are using the GNU C compiler
configure:2205: cc -c -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
"configure", line 2196: error(1020): identifier "choke" is undefined
choke me
^
1 error detected in the compilation of "conftest.c".
configure:2208: $? = 2
configure: failed program was:
#line 2190 "configure"
#include "confdefs.h"
int
main ()
{
#ifndef __GNUC__
choke me
#endif
;
return 0;
}
configure:2226: result: no
configure:2232: checking whether cc accepts -g
configure:2250: cc -c -g -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
configure:2253: $? = 0
configure:2256: test -s conftest.o
configure:2259: $? = 0
configure:2269: result: yes
configure:2296: cc -c -g -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
"conftest.c", line 2: error(1020): identifier "choke" is undefined
choke me
^
At end of source: error(1065): expected a ";"
2 errors detected in the compilation of "conftest.c".
configure:2299: $? = 2
configure: failed program was:
#ifndef __cplusplus
choke me
#endif
configure:2405: checking for style of include used by make
configure:2432: result: none
configure:2438: checking dependency style of cc
configure:2500: result: none
configure:2558: checking for f77
configure:2573: found /usr/bin/f77
configure:2581: result: f77
configure:2595: checking for Fortran 77 compiler version
configure:2598: f77 --version </dev/null >&5
f77 ERROR: --version not allowed in non XPG4 environment
f77 ERROR parsing --version: unknown flag
f77 ERROR: no source or object file given
configure:2601: $? = 2
configure:2603: f77 -v </dev/null >&5
f77 ERROR: no source or object file given
configure:2606: $? = 2
configure:2608: f77 -V </dev/null >&5
f77 WARNING: -V is ignored
f77 ERROR: no source or object file given
configure:2611: $? = 2
configure:2618: checking whether we are using the GNU Fortran 77 compiler
configure:2632: f77 -c conftest.F >&5
"conftest.F", line 3: error(2043): unrecognized statement
choke me
^
1 error detected in the compilation of "conftest.F".
configure:2635: $? = 2
configure: failed program was:
program main
#ifndef __GNUC__
choke me
#endif
end
configure:2653: result: no
configure:2660: checking whether f77 accepts -g
configure:2672: f77 -c -g conftest.f >&5
configure:2675: $? = 0
configure:2678: test -s conftest.o
configure:2681: $? = 0
configure:2692: result: yes
configure:3384: checking how to get verbose linking output from f77
configure:3396: f77 -c -g conftest.f >&5
configure:3399: $? = 0
configure:3402: test -s conftest.o
configure:3405: $? = 0
configure:3427: f77 -o conftest -g -v -L/home/sgifar/feenstra/progs/fftw/lib conftest.f >&5
/usr/lib32/cmplrs/mfef77 -G8 -DMIPSEB -D_MIPSEB -TENV:PIC -D_PIC -D__DSO__ -D_LANGUAGE_FORTRAN -DLANGUAGE_FORTRAN -D_LANGUAGE_FORTRAN77 -DLANGUAGE_FORTRAN77 -Dmips -Dunix -Dsgi -Dhost_mips -D_SGI_SOURCE -D_LONGLONG -D_SVR4_SOURCE -D__sgi -D__host_mips -Amachine(mips) -D_SYSTYPE_SVR4 -D__unix -Asystem(unix) -D_COMPILER_VERSION=721 -m1 -g2 -show -D__mips=4 -D_MIPS_ISA=4 -D_ABIN32=2 -D_MIPS_SIM=_ABIN32 -D_MIPS_FPSET=32 -D_MIPS_SZINT=32 -D_MIPS_SZLONG=32 -D_MIPS_SZPTR=32 -TARG:abi=n32:isa=mips4 -TARG:proc=r10000 -O0 -I/usr/include -include=/usr/include -FE:cmdline=/tmp/ctmL.AAAa08uLx -fB,/tmp/ctmB.BAAa08uLx -TENV:io_library=mips conftest.f
Compiling MAIN__
/usr/lib32/cmplrs/be -PHASE:c -G8 -TENV:PIC -m1 -g2 -show -TARG:abi=n32:isa=mips4 -TARG:proc=r10000 -O0 -LANG:=f77 -TENV:io_library=mips -TARG:t5_ll_sc_bug=on -fB,/tmp/ctmB.BAAa08uLx -fo,conftest.o conftest.f
Compiling conftest.f (/tmp/ctmB.BAAa08uLx) -- Back End
Compiling MAIN__(0)
/usr/lib32/cmplrs/ld32 -call_shared -no_unresolved -transitive_link -elf -_SYSTYPE_SVR4 -g2 -show -L/home/sgifar/feenstra/progs/fftw/lib -mips4 -n32 -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -nocount /usr/lib32/mips4/crt1.o -count -o conftest conftest.o -nocount -dont_warn_unused -lftn -lm -Bdynamic -lc /usr/lib32/mips4/crtn.o -warn_unused
(null): INFO 152: /usr/lib32/cmplrs/ld32.
configure:3471: result: -v
configure:3473: checking for Fortran 77 libraries
configure:3499: f77 -o conftest -g -v -L/home/sgifar/feenstra/progs/fftw/lib conftest.f >&5
/usr/lib32/cmplrs/mfef77 -G8 -DMIPSEB -D_MIPSEB -TENV:PIC -D_PIC -D__DSO__ -D_LANGUAGE_FORTRAN -DLANGUAGE_FORTRAN -D_LANGUAGE_FORTRAN77 -DLANGUAGE_FORTRAN77 -Dmips -Dunix -Dsgi -Dhost_mips -D_SGI_SOURCE -D_LONGLONG -D_SVR4_SOURCE -D__sgi -D__host_mips -Amachine(mips) -D_SYSTYPE_SVR4 -D__unix -Asystem(unix) -D_COMPILER_VERSION=721 -m1 -g2 -show -D__mips=4 -D_MIPS_ISA=4 -D_ABIN32=2 -D_MIPS_SIM=_ABIN32 -D_MIPS_FPSET=32 -D_MIPS_SZINT=32 -D_MIPS_SZLONG=32 -D_MIPS_SZPTR=32 -TARG:abi=n32:isa=mips4 -TARG:proc=r10000 -O0 -I/usr/include -include=/usr/include -FE:cmdline=/tmp/ctmL.AAAa09CJ0 -fB,/tmp/ctmB.BAAa09CJ0 -TENV:io_library=mips conftest.f
Compiling MAIN__
/usr/lib32/cmplrs/be -PHASE:c -G8 -TENV:PIC -m1 -g2 -show -TARG:abi=n32:isa=mips4 -TARG:proc=r10000 -O0 -LANG:=f77 -TENV:io_library=mips -TARG:t5_ll_sc_bug=on -fB,/tmp/ctmB.BAAa09CJ0 -fo,conftest.o conftest.f
Compiling conftest.f (/tmp/ctmB.BAAa09CJ0) -- Back End
Compiling MAIN__(0)
/usr/lib32/cmplrs/ld32 -call_shared -no_unresolved -transitive_link -elf -_SYSTYPE_SVR4 -g2 -show -L/home/sgifar/feenstra/progs/fftw/lib -mips4 -n32 -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -nocount /usr/lib32/mips4/crt1.o -count -o conftest conftest.o -nocount -dont_warn_unused -lftn -lm -Bdynamic -lc /usr/lib32/mips4/crtn.o -warn_unused
(null): INFO 152: /usr/lib32/cmplrs/ld32.
configure:3654: result: -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm
configure:3664: checking for dummy main to link with Fortran 77 libraries
configure:3697: cc -o conftest -g -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm >&5
ld32: WARNING 85: definition of main in conftest.o preempts that definition in /usr/lib32/mips4/libftn.so.
ld32: WARNING 84: /usr/lib32/mips4/libftn.so is not used for resolving any symbol.
configure:3700: $? = 0
configure:3703: test -s conftest
configure:3706: $? = 0
configure:3765: result: none
configure:3782: checking for Fortran 77 name-mangling scheme
configure:3800: f77 -c -g conftest.f >&5
configure:3803: $? = 0
configure:3806: test -s conftest.o
configure:3809: $? = 0
configure:3852: cc -o conftest -g -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c cf77_test.o -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm >&5
ld32: WARNING 85: definition of main in conftest.o preempts that definition in /usr/lib32/mips4/libftn.so.
ld32: WARNING 84: /usr/lib32/mips4/libftn.so is not used for resolving any symbol.
ld32: ERROR 33: Unresolved text symbol "foobar" -- 1st referenced by conftest.o.
foobar_ was defined in cf77_test.o
ld32: INFO 152: Output file removed because of error.
configure:3855: $? = 2
configure: failed program was:
#line 3827 "configure"
#include "confdefs.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C"
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char foobar ();
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
extern "C"
# endif
int F77_DUMMY_MAIN() { return 1; }
#endif
int
main ()
{
foobar ();
;
return 0;
}
configure:3852: cc -o conftest -g -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c cf77_test.o -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm >&5
ld32: WARNING 85: definition of main in conftest.o preempts that definition in /usr/lib32/mips4/libftn.so.
ld32: WARNING 84: /usr/lib32/mips4/libftn.so is not used for resolving any symbol.
configure:3855: $? = 0
configure:3858: test -s conftest
configure:3861: $? = 0
configure:3913: cc -o conftest -g -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib conftest.c cf77_test.o -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm >&5
ld32: WARNING 85: definition of main in conftest.o preempts that definition in /usr/lib32/mips4/libftn.so.
ld32: WARNING 84: /usr/lib32/mips4/libftn.so is not used for resolving any symbol.
configure:3916: $? = 0
configure:3919: test -s conftest
configure:3922: $? = 0
configure:3969: result: lower case, underscore, no extra underscore
configure:4058: checking how to run the C preprocessor
configure:4084: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
configure:4090: $? = 0
configure:4117: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
"configure", line 4114: error(1005): could not open source file
"ac_nonexistent.h"
#include <ac_nonexistent.h>
^
1 catastrophic error detected in the compilation of "conftest.c".
Compilation terminated.
configure:4123: $? = 2
configure: failed program was:
#line 4113 "configure"
#include "confdefs.h"
#include <ac_nonexistent.h>
configure:4160: result: cc -E
configure:4175: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
configure:4181: $? = 0
configure:4208: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
"configure", line 4205: error(1005): could not open source file
"ac_nonexistent.h"
#include <ac_nonexistent.h>
^
1 catastrophic error detected in the compilation of "conftest.c".
Compilation terminated.
configure:4214: $? = 2
configure: failed program was:
#line 4204 "configure"
#include "confdefs.h"
#include <ac_nonexistent.h>
configure:4881: checking whether cc accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS
configure:4895: result: no
configure:4929: checking whether f77 accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -OPT:cray_ivdep=TRUE
configure:4947: result: yes
configure:5075: checking for ident
configure:5092: found /usr/sbin/ident
configure:5104: result: /usr/sbin/ident
configure:5114: checking whether the compiler supports ident
configure:5122: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
configure:5128: $? = 0
configure:5140: result: yes
configure:5281: checking for non-GNU ld
configure:5312: result: /usr/bin/ld
configure:5321: checking if the linker (/usr/bin/ld) is GNU ld
configure:5333: result: no
configure:5337: checking for /usr/bin/ld option to reload object files
configure:5344: result: -r
configure:5353: checking for BSD-compatible nm
configure:5388: result: /usr/bin/nm -B
configure:5392: checking whether ln -s works
configure:5396: result: yes
configure:5403: checking how to recognise dependant libraries
configure:5575: result: pass_all
configure:5601: cc -c -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
configure:5604: $? = 0
configure:5695: checking for dlfcn.h
configure:5705: cc -E -I/home/sgifar/feenstra/progs/fftw/include conftest.c
configure:5711: $? = 0
configure:5730: result: yes
configure:5743: checking the maximum length of command line arguments
configure:5792: result: 12289
configure:5800: checking command to parse /usr/bin/nm -B output from cc object
configure:5882: cc -c -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
configure:5885: $? = 0
configure:5889: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p' \> conftest.nm
configure:5892: $? = 0
configure:5944: cc -o conftest -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib -n32 -r12000 -mips4 -woff 84 conftest.c conftstm.o >&5
cc ERROR parsing -r12000: unknown flag
configure:5947: $? = 2
configure:5882: cc -c -I/home/sgifar/feenstra/progs/fftw/include conftest.c >&5
configure:5885: $? = 0
configure:5889: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\(_\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p' \> conftest.nm
configure:5892: $? = 0
cannot run sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\(_\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p'
configure:5982: result: failed
configure:5989: checking for objdir
configure:6004: result: .libs
configure:6087: checking for ranlib
configure:6111: result: :
configure:6161: checking for strip
configure:6176: found /usr/bin/strip
configure:6185: result: strip
configure:6434: checking if cc static flag works
configure:6457: result: no
configure:6510: checking for cc option to produce PIC
configure:6669: result:
configure:6720: checking if cc PIC define -DPIC works
configure:6744: result: yes
configure:6756: checking if cc supports -c -o file.o
configure:6797: result: yes
configure:6822: checking whether the cc linker (/usr/bin/ld -n32) supports shared libraries
configure:7572: result: yes
configure:7637: checking how to hardcode library paths into programs
configure:7661: result: immediate
configure:7675: checking whether stripping libraries is possible
configure:7683: result: no
configure:7687: checking dynamic linker characteristics
configure:8093: result: irix6.5 ld.so
configure:8666: checking if libtool supports shared libraries
configure:8668: result: yes
configure:8671: checking whether to build shared libraries
configure:8690: result: no
configure:8693: checking whether to build static libraries
configure:8697: result: yes
configure:8776: creating libtool
configure:12140: checking if libtool supports shared libraries
configure:12142: result: yes
configure:12145: checking whether to build shared libraries
configure:12163: result: no
configure:12166: checking whether to build static libraries
configure:12170: result: yes
configure:12182: checking for f77 option to produce PIC
configure:12341: result:
configure:12392: checking if f77 PIC define -DPIC works
configure:12416: result: no
configure:12428: checking if f77 supports -c -o file.o
configure:12469: result: no
configure:12494: checking whether the f77 linker (/usr/bin/ld -n32) supports shared libraries
configure:13218: result: yes
configure:13283: checking how to hardcode library paths into programs
configure:13307: result: immediate
configure:13321: checking whether stripping libraries is possible
configure:13329: result: no
configure:13333: checking dynamic linker characteristics
configure:13739: result: irix6.5 ld.so
configure:16747: checking whether ln -s works
configure:16751: result: yes
configure:16762: checking for sqrt in -lm
configure:16795: cc -o conftest -I/home/sgifar/feenstra/progs/fftw/include -L/home/sgifar/feenstra/progs/fftw/lib -n32 -r12000 -mips4 -woff 84 conftest.c -lm >&5
cc ERROR parsing -r12000: unknown flag
configure:16798: $? = 2
configure: failed program was:
#line 16770 "configure"
#include "confdefs.h"
/* Override any gcc2 internal prototype to avoid an error. */
#ifdef __cplusplus
extern "C"
#endif
/* We use char because int might match the return type of a gcc2
builtin and then its argument prototype would still apply. */
char sqrt ();
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
extern "C"
# endif
int F77_DUMMY_MAIN() { return 1; }
#endif
int
main ()
{
sqrt ();
;
return 0;
}
configure:16815: result: no
configure:16825: error: No math library found
## ----------------- ##
## Cache variables. ##
## ----------------- ##
ac_cv_build=mips-sgi-irix6.5
ac_cv_build_alias=mips-sgi-irix6.5
ac_cv_c_compiler_gnu=no
ac_cv_env_CC_set=''
ac_cv_env_CC_value=''
ac_cv_env_CFLAGS_set=''
ac_cv_env_CFLAGS_value=''
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/home/sgifar/feenstra/progs/fftw/include
ac_cv_env_CPP_set=''
ac_cv_env_CPP_value=''
ac_cv_env_CXXCPP_set=''
ac_cv_env_CXXCPP_value=''
ac_cv_env_CXXFLAGS_set=''
ac_cv_env_CXXFLAGS_value=''
ac_cv_env_CXX_set=''
ac_cv_env_CXX_value=''
ac_cv_env_F77_set=''
ac_cv_env_F77_value=''
ac_cv_env_FFLAGS_set=''
ac_cv_env_FFLAGS_value=''
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/home/sgifar/feenstra/progs/fftw/lib
ac_cv_env_build_alias_set=''
ac_cv_env_build_alias_value=''
ac_cv_env_host_alias_set=''
ac_cv_env_host_alias_value=''
ac_cv_env_target_alias_set=''
ac_cv_env_target_alias_value=''
ac_cv_f77_compiler_gnu=no
ac_cv_f77_dummy_main=none
ac_cv_f77_mangling='lower case, underscore, no extra underscore'
ac_cv_flibs=' -L/home/sgifar/feenstra/progs/fftw/lib -L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm'
ac_cv_header_dlfcn_h=yes
ac_cv_host=mips-sgi-irix6.5
ac_cv_host_alias=mips-sgi-irix6.5
ac_cv_lib_m_sqrt=no
ac_cv_objext=o
ac_cv_path_IDENT=/usr/sbin/ident
ac_cv_prog_AWK=nawk
ac_cv_prog_CPP='cc -E'
ac_cv_prog_ac_ct_CC=cc
ac_cv_prog_ac_ct_F77=f77
ac_cv_prog_ac_ct_RANLIB=:
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f77_v=-v
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=none
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=/lib/libc.so.1
lt_cv_ld_reload_flag=-r
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_F77=no
lt_cv_prog_gnu_ld=no
lt_cv_sys_global_symbol_pipe=''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^\'^: \([^\'^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^\'^[BCDEGRST] \([^\'^ ]*\) \([^\'^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\'
lt_cv_sys_global_symbol_to_cdecl=''
lt_cv_sys_max_cmd_len=12289
lt_lt_cv_prog_compiler_c_o='"yes"'
lt_lt_cv_prog_compiler_c_o_F77='"no"'
lt_lt_cv_sys_global_symbol_pipe='""'
lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^\'^: \\([^\'^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^\'^[BCDEGRST] \\([^\'^ ]*\\) \\([^\'^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"'
lt_lt_cv_sys_global_symbol_to_cdecl='""'
## ------------ ##
## confdefs.h. ##
## ------------ ##
#define PACKAGE "gromacs"
#define VERSION "3.0.5"
#define USE_FORTRAN
#define DISABLE_WATERWATER_LOOPS
#define F77_FUNC(name,NAME) name ## _
#define F77_FUNC_(name,NAME) name ## _
#define HAVE_IDENT
#define HAVE_DLFCN_H 1
configure: exit 1
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