[gmx-users] what does "Excluding 1 bonded neighbours for" mean?

[Rui Qiao]

Dear All:
	I am running Gromacs and get the following information:

processing topology...
Excluding 1 bonded neighbours for Wall          1152
turning all bonds into constraints...
Excluding 1 bonded neighbours for Fld           3717
turning all bonds into constraints...
processing coordinates...

	What does it means when saying "excluding # bonded neighbours for"
. I did not define any bond in my system at all. In my system I have 1152
wall atoms, and 3717 Fld atoms.

	Thanks a lot.

	Rui	

------------------------
Rui Qiao
Research Assistant
Beckman Institute, UIUC