[gmx-users] do_dssp for fragment
mynowak at cyf-kr.edu.pl
Thu Jul 11 14:08:19 CEST 2002
Since the recognition of secondary structure by DSSP algorithm is based on
H bond network, I was wondering what happens if I analyze only the part of
my protein using do_dssp. Will H bonds between specicied fragment and the
rest of the protein be taken into account? Or rather only H bonds created
inside fragment specicied in index file?
Thanks in advence!
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