[gmx-users] Naming of hydrogens
Anton Feenstra
feenstra at chem.vu.nl
Tue Jul 16 14:53:07 CEST 2002
David van der Spoel wrote:
>
> Hi,
>
> Has anyone ever checked the naming of hydrogen atoms in gromacs, in
> particular in the all-atom force fields?
>
> It could well be that naming of many of the hydrogens is wrong, although
> that won't affect your results, it can be inconvenient when comparing to
> experimental data from distance restraints.
I know Eiso AB (from Groningen) has identified several such mis-namings,
which were all corrected. That doesn't say, however, if there are (m)any
remaining... ;-{
--
Groetjes,
Anton
________ ___________________________________________________________
| | Anton Feenstra |
| . | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
| |---- | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands |
| |---- | Tel: +31 20 44 47608 - Fax: +31 20 44 47610 |
| ' __ | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
| / \ |-----------------------------------------------------------|
| ( ) | Dept. of Biophysical Chemistry - University of Groningen |
| \__/ | Nijenborgh 4 - 9747 AG Groningen - The Netherlands |
| __ | Tel +31 50 363 4327 - Fax +31 50 363 4800 |
| / \ | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton |
| ( ) |-----------------------------------------------------------|
| \__/ | "Right Now My Job is Eating These Doughnuts" (Bodycount) |
|________|___________________________________________________________|
More information about the gromacs.org_gmx-users
mailing list