[gmx-users] How to make a TM protein - Help

[J Simms]

Hi all, 	
	I am working on a G protein coupled receptor, and would like to 
run a series of MD runs on the helicies. I have followed the tutorial 
and can do these runs in SPC water, but I would now like to do 
similiar runs in a membrane domain. As I understand it I can obtain 
lipid topologies from the net, my question is how do I a) use these 
topoligies and b) make a hole/channel in the lipid for my protein to 
sit. Once that is done how do I then place the protein in the 
channel in the lipid. I am VERY new at this any any help would be 
greatly appreciated!

Many Thanks in Advance

John Simms