[gmx-users] PRODRG Server

[hugo verli]

The molecule has 210 atoms and, until I know, the server can handle with 300
atoms. There is some other limitation to use the server, like the number of
freedom degrees?

> > 
> > One more question. I have inserted another molecule of 210 atoms in
> > PRODRG
> > Server. I received the following message:
> > 
> > ERRDRG> Error in recursion (molecule too complex).
> > PRODRG> Drug topology not made, sorry!
> > 
> > The pdb file is ok. Am I missing something?
> 
> I think the sever can only convert the pdb file of small molecules to
> the
> topology file. Perhaps, your molecule is big.
>   
> 

Thanks,

Hugo Verli.