[gmx-users] segmentation fault on trjconv with deshuf

Lynne E. Bilston l.bilston at unsw.edu.au
Fri Jun 14 03:30:23 CEST 2002

Hi all,

I've used the -shuffle -sort options for a longish run (1ns), and now I 
want to continue the run from that endpoint. Of course, grompp complaints 
about the atom names not matching due to the shuffling/sorting.

I wanted to try the deshuffling option of trjconv, as suggested in the 
list, but using that option in trjconv gives me a segmentation fault, with 
core dump, as it starts to write the file out. Other options in trjconv 
seem to work fine.

I'm running on a dual athlon, Redhat 7.2, Gromacs 3.1.3. Everything 
installed from the rpms off the website (except I recompiled lam, but 
that's probably not relevant as I'm not using it here...)

Any ideas - either on how to continue my run or the core dump in trjconv?


Lynne E. Bilston, PhD
Senior Scientist, Prince of Wales Medical Research Institute, and
Conjoint Associate Professor, Faculty of Medicine, University of New South 
Barker St, Randwick, NSW 2031 Australia
Tel: +61-2-9382-7924	Fax: +61-2-9382-2643

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