[gmx-users] segmentation fault on trjconv with deshuf
Lynne E. Bilston
l.bilston at unsw.edu.au
Fri Jun 14 03:30:23 CEST 2002
I've used the -shuffle -sort options for a longish run (1ns), and now I
want to continue the run from that endpoint. Of course, grompp complaints
about the atom names not matching due to the shuffling/sorting.
I wanted to try the deshuffling option of trjconv, as suggested in the
list, but using that option in trjconv gives me a segmentation fault, with
core dump, as it starts to write the file out. Other options in trjconv
seem to work fine.
I'm running on a dual athlon, Redhat 7.2, Gromacs 3.1.3. Everything
installed from the rpms off the website (except I recompiled lam, but
that's probably not relevant as I'm not using it here...)
Any ideas - either on how to continue my run or the core dump in trjconv?
Lynne E. Bilston, PhD
Senior Scientist, Prince of Wales Medical Research Institute, and
Conjoint Associate Professor, Faculty of Medicine, University of New South
Barker St, Randwick, NSW 2031 Australia
Tel: +61-2-9382-7924 Fax: +61-2-9382-2643
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