[gmx-users] genion

David spoel at xray.bmc.uu.se
Thu Jun 27 12:49:43 CEST 2002


On Thu, 2002-06-27 at 12:37, Dmitry Kovalsky wrote:
lect a group: 15
> Fatal error: The solvent group is not continuous: index[3]=9381, index[4]=9364
> -----------------
> What  does this mean? 
That your 7 water molecules do not have continuous numbers. This is
probably a requirement due to some simplisitc algorithm (most likely
written by me). You have to renumber your molecules (i.e. put those 7
all at the end of the water in the gro file and remake your index file.


-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
Husargatan 3, Box 576,  	75123 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://zorn.bmc.uu.se/~spoel
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