[gmx-users] image jumps in VMD

[Dr. Y. U. Sasidhar]

Richard Filmer wrote:

>  
>
>if the atoms in your trr file do not match up exactly with your gro file,
>VMD will only see one frame (ie. it will read the gro file). 
>
This was the error we were making !

>
>When running trjconv, first select 'protein' in choosing what to center,
>then 'system' in choosing what to write to file. Make sure you have a gro
>file that matches your trr (includes all water and ions, etc.).
>
This procedure is working . Many thank for the help.
Sasidhar