[gmx-users] Re: Gromacs - installation problems

[Anton Feenstra]

Robert Bywater wrote:
> 
> Anton, can you guess from this what I am doing wrong?
> 
> Should I be 'root' ?
> Should I have set some environment variables ?
> 
> ( I *did* read the INSTALL notes ...)

I'll cc this again, now without cutting away your ./configure output ;-)

> regds
> 
> Robert B.
> 
> >>>>>>>>>>>>>>>>>>>>>
> 
> bisse82% ./configure
> checking build system type... mips-sgi-irix6.5
> checking host system type... mips-sgi-irix6.5
> checking for a BSD compatible install... config/install-sh -c
> checking whether build environment is sane... yes
> checking for awk... awk
> checking whether make sets ${MAKE}... yes
> checking for cc... cc
> checking for C compiler default output... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for executable suffix...
> checking for object suffix... o
> checking whether we are using the GNU C compiler... no
> checking whether cc accepts -g... yes
> checking for style of include used by make... GNU
> checking dependency style of cc... sgi
> checking for f77... f77
> checking whether we are using the GNU Fortran 77 compiler... no
> checking whether f77 accepts -g... yes
> checking how to get verbose linking output from f77... -v
> checking for Fortran 77 libraries...  -L/usr/lib32/mips4/r10000
> -L/usr/lib32/mips4 -L/usr/lib32 -lftn -lm
> checking for dummy main to link with Fortran 77 libraries... none
> checking for Fortran 77 name-mangling scheme... lower case, underscore, no
> extra underscore
> checking how to run the C preprocessor... cc -E
> MIPSpro Compilers: Version 7.2.1
> MIPSpro Compilers: Version 7.2.1
> checking whether cc accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3
> -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
> -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS... no
> *******************************************************************
> * Sorry, these optimization settings don't seem to work for       *
> * your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
> *******************************************************************
> checking whether f77 accepts -n32 -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3
> -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3
> -OPT:Olimit=0:roundoff=3:alias=typed -OPT:cray_ivdep=TRUE... f77 ERROR parsing
> -r12000:  unknown flag
> yes
> checking for ident... /usr/sbin/ident
> checking whether the compiler supports ident... yes
> checking for non-GNU ld... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... no
> checking for /usr/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependant libraries... pass_all
> checking for dlfcn.h... yes
> checking the maximum length of command line arguments... 8192
> checking command to parse /usr/bin/nm -B output from cc object... failed
> checking for objdir... .libs
> checking for ranlib... :
> checking for strip... strip
> checking if cc static flag  works... no
> checking for cc option to produce PIC...
> checking if cc PIC define -DPIC works... yes
> checking if cc supports -c -o file.o... no
> checking if we can lock with hard links... yes
> checking whether the cc linker (/usr/bin/ld -n32) supports shared libraries...
> yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... no
> checking dynamic linker characteristics... irix6.5 ld.so
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for f77 option to produce PIC...
> checking if f77 PIC define -DPIC works... no
> checking if f77 supports -c -o file.o... no
> checking if we can lock with hard links... yes
> checking whether the f77 linker (/usr/bin/ld -n32) supports shared libraries...
> yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... no
> checking dynamic linker characteristics... irix6.5 ld.so
> checking whether ln -s works... yes
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> checking for _LARGE_FILES value needed for large files... no
> checking for _LARGEFILE_SOURCE value needed for large files... no
> checking for fseeko... no
> checking for sqrt in -lm... no
> configure: error: No math library found
> bisse83% make
> no arguments or description file (bu7).
> bisse84% make check
> don't know how to make check (bu42).
> bisse85% make install
> don't know how to make install (bu42).

-- 
Groetjes,

Anton
 ________ ___________________________________________________________
|        | Anton Feenstra                                            |
| .      | Dept. of Pharmacochemistry - Free University Amsterdam    |
| |----  | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands   |
| |----  | Tel: +31 20 44 47608 - Fax: +31 20 44 47610               |
| ' __   | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
|  /  \  |-----------------------------------------------------------|
| (    ) | Dept. of Biophysical Chemistry - University of Groningen  |
|  \__/  | Nijenborgh 4 - 9747 AG Groningen - The Netherlands        |
|   __   | Tel +31 50 363 4327 - Fax +31 50 363 4800                 |
|  /  \  | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton   |
| (    ) |-----------------------------------------------------------|
|  \__/  | "Step On the Brakes" (2 Unlimited)                        |
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