[gmx-users] parallel problem

[Mehmet Suezen]

 You may get some more information by -echo to see what MPICH doing
 exactly as
 
 $ mpirun -echo -np 2 -machinefile hostlist mdrun -np 2  -s mini
 
 But Which MPI implementation and version are you using? MPICH has
 built-in debugger tools to see where the problem has occured. I'm also
 assuming you gave hostnames properly.
 But as DAvid  suggested just compile it LAM-MPI.

mehmet
 
> Yuguang Mu wrote:
> >
> > I do use
> >  mpirun -c 2 mdrun -np 2  -s mini
> > But the problem is the same :
> >
> > Back Off! I just backed up mini.log to #mini.log#
> > Reading file mini.tpr, VERSION 3.0.5 (single precision)
> > Reading file mini.tpr, VERSION 3.0.5 (single precision)
> > Fatal error: run input file mini.tpr was made for 2 nodes,
> >              while mdrun expected it to be for 1 nodes.
> > [0] MPI Abort by user Aborting program !
> > [0] Aborting program!
> >     p4_error: latest msg from perror: No such file or directory